BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952585
Length=418
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03740.1 | Symbols: ATBPM4, BPM4 | BTB-POZ and MATH domain 4... 640 0.0
AT3G43700.1 | Symbols: ATBPM6, BPM6 | BTB-POZ and MATH domain 6... 198 3e-50
> AT3G03740.1 | Symbols: ATBPM4, BPM4 | BTB-POZ and MATH domain
4 | chr3:936878-939808 REVERSE LENGTH=1627
Length=1627
Score = 640 bits (346), Expect = 0.0
Identities = 374/387 (97%), Gaps = 4/387 (1%)
Strand=Plus/Plus
Query 5 GACGAAATTTTCGAAAATGCCATCGCCACCGACGACGACTTCTCTCTCCGTCACACAAAC 64
||||||| ||||| |||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 75 GACGAAA-TTTCG-AAATGCCATCGCCACCGACGACGACTTCTCTCTCGGTGACACAGAC 132
Query 65 CATAAACGGATCACACAGCTTCACAATCAAAGGCTATTCTTTGGCCAAAGGAATCGGGAT 124
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 133 CATAAACGGATCACACAGCTTCACAATCAAAGGCTATTCTTTGGCTAAAGGAATCGGGAT 192
Query 125 CGGAAAACACATCGCCAGCGATACTTTCACCGTCGGAGGCTATCAATGGGCAATCTATTT 184
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 193 CGGAAAACACATCGCCAGCGATACTTTCACCGTCGGGGGTTATCAATGGGCTATCTATTT 252
Query 185 CTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTCTCCGTTTTCATTGCTCT 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 253 CTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTCTCCGTTTTCATTGCT-T 311
Query 245 T-GCTAGCGATGGTACCGATGTTAGGGCTCTCTTTGAGCTTTCTTTGCTTGATCAGAGTG 303
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 312 TAGCTAGCGATGGTACCGATGTTAGGGCTCTTTTTGAGCTTTCTTTGCTTGATCAGAGTG 371
Query 304 GTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCGTGCTCTTGAGAGCGGTCCTTATA 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 GTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCGTGCTCTTGAGAGCGGTCCTTATA 431
Query 364 CACTCAAGTATCGTGGCAGCATGTGGG 390
| |||||||||||||||||||||||||
Sbjct 432 CTCTCAAGTATCGTGGCAGCATGTGGG 458
> AT3G43700.1 | Symbols: ATBPM6, BPM6 | BTB-POZ and MATH domain
6 | chr3:15601868-15603888 FORWARD LENGTH=1713
Length=1713
Score = 198 bits (107), Expect = 3e-50
Identities = 234/294 (80%), Gaps = 14/294 (5%)
Strand=Plus/Plus
Query 104 TTTGGCCAAAGGAATCGG-GATCGGAAAACACATCGCCAGCGATACTTTCACCGTCGGAG 162
||| || |||||||| || | | || |||||||| || || |||| |||| |||| ||||
Sbjct 214 TTTAGCTAAAGGAATTGGTG-TAGGGAAACACATAGCAAGTGATAATTTCTCCGTAGGAG 272
Query 163 GCTATCAATGGGCAATCTAT-TTCTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCT 221
| ||||||||| | |||| | |||| ||||| || || ||||| |||||||| || ||
Sbjct 273 GTTATCAATGGACTATCT-TCGTCTACCCTGACGGTAAAAATCCAGAGGATAACTCTTCT 331
Query 222 TATGTCTCCGTTTTCATTGCTCTT-GCTAGCG-ATGGTACCGATGTTAGGGCTCTCTTTG 279
|| ||||| || ||||| | | || ||||| | || |||| || ||||| || || ||||
Sbjct 332 TACGTCTCTGTGTTCATCG-TTTTGGCTAGTGAAT-GTACTGAAGTTAGAGCGCTTTTTG 389
Query 280 AGCTTTCT-TTGCTTGATCAGAGTGGTAAAGGGAAGCATAAGGTTCATAGCCACTTCGAT 338
|||||||| ||| ||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 390 AGCTTTCTCTTG-TTGATCAAAGTGGTAAAGGGAAGCATAAGGTTCATAGCCATTTTAAT 448
Query 339 CGTGCTCTTGA-GAGCGGTCCTTATACACTCAAGTATC-GTGGCAGCATGTGGG 390
||| | ||||| | | ||||||||||| || ||||| | | || || |||||||
Sbjct 449 CGTTCACTTGATG-GTGGTCCTTATACGCTTAAGTA-CAGAGGAAGTATGTGGG 500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19805493106
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5