BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952585 Length=418 Score E Sequences producing significant alignments: (Bits) Value AT3G03740.1 | Symbols: ATBPM4, BPM4 | BTB-POZ and MATH domain 4... 640 0.0 AT3G43700.1 | Symbols: ATBPM6, BPM6 | BTB-POZ and MATH domain 6... 198 3e-50 > AT3G03740.1 | Symbols: ATBPM4, BPM4 | BTB-POZ and MATH domain 4 | chr3:936878-939808 REVERSE LENGTH=1627 Length=1627 Score = 640 bits (346), Expect = 0.0 Identities = 374/387 (97%), Gaps = 4/387 (1%) Strand=Plus/Plus Query 5 GACGAAATTTTCGAAAATGCCATCGCCACCGACGACGACTTCTCTCTCCGTCACACAAAC 64 ||||||| ||||| |||||||||||||||||||||||||||||||||| || ||||| || Sbjct 75 GACGAAA-TTTCG-AAATGCCATCGCCACCGACGACGACTTCTCTCTCGGTGACACAGAC 132 Query 65 CATAAACGGATCACACAGCTTCACAATCAAAGGCTATTCTTTGGCCAAAGGAATCGGGAT 124 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 133 CATAAACGGATCACACAGCTTCACAATCAAAGGCTATTCTTTGGCTAAAGGAATCGGGAT 192 Query 125 CGGAAAACACATCGCCAGCGATACTTTCACCGTCGGAGGCTATCAATGGGCAATCTATTT 184 |||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| Sbjct 193 CGGAAAACACATCGCCAGCGATACTTTCACCGTCGGGGGTTATCAATGGGCTATCTATTT 252 Query 185 CTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTCTCCGTTTTCATTGCTCT 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 253 CTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTCTCCGTTTTCATTGCT-T 311 Query 245 T-GCTAGCGATGGTACCGATGTTAGGGCTCTCTTTGAGCTTTCTTTGCTTGATCAGAGTG 303 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 312 TAGCTAGCGATGGTACCGATGTTAGGGCTCTTTTTGAGCTTTCTTTGCTTGATCAGAGTG 371 Query 304 GTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCGTGCTCTTGAGAGCGGTCCTTATA 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 372 GTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCGTGCTCTTGAGAGCGGTCCTTATA 431 Query 364 CACTCAAGTATCGTGGCAGCATGTGGG 390 | ||||||||||||||||||||||||| Sbjct 432 CTCTCAAGTATCGTGGCAGCATGTGGG 458 > AT3G43700.1 | Symbols: ATBPM6, BPM6 | BTB-POZ and MATH domain 6 | chr3:15601868-15603888 FORWARD LENGTH=1713 Length=1713 Score = 198 bits (107), Expect = 3e-50 Identities = 234/294 (80%), Gaps = 14/294 (5%) Strand=Plus/Plus Query 104 TTTGGCCAAAGGAATCGG-GATCGGAAAACACATCGCCAGCGATACTTTCACCGTCGGAG 162 ||| || |||||||| || | | || |||||||| || || |||| |||| |||| |||| Sbjct 214 TTTAGCTAAAGGAATTGGTG-TAGGGAAACACATAGCAAGTGATAATTTCTCCGTAGGAG 272 Query 163 GCTATCAATGGGCAATCTAT-TTCTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCT 221 | ||||||||| | |||| | |||| ||||| || || ||||| |||||||| || || Sbjct 273 GTTATCAATGGACTATCT-TCGTCTACCCTGACGGTAAAAATCCAGAGGATAACTCTTCT 331 Query 222 TATGTCTCCGTTTTCATTGCTCTT-GCTAGCG-ATGGTACCGATGTTAGGGCTCTCTTTG 279 || ||||| || ||||| | | || ||||| | || |||| || ||||| || || |||| Sbjct 332 TACGTCTCTGTGTTCATCG-TTTTGGCTAGTGAAT-GTACTGAAGTTAGAGCGCTTTTTG 389 Query 280 AGCTTTCT-TTGCTTGATCAGAGTGGTAAAGGGAAGCATAAGGTTCATAGCCACTTCGAT 338 |||||||| ||| ||||||| |||||||||||||||||||||||||||||||| || || Sbjct 390 AGCTTTCTCTTG-TTGATCAAAGTGGTAAAGGGAAGCATAAGGTTCATAGCCATTTTAAT 448 Query 339 CGTGCTCTTGA-GAGCGGTCCTTATACACTCAAGTATC-GTGGCAGCATGTGGG 390 ||| | ||||| | | ||||||||||| || ||||| | | || || ||||||| Sbjct 449 CGTTCACTTGATG-GTGGTCCTTATACGCTTAAGTA-CAGAGGAAGTATGTGGG 500 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19805493106 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5