BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952586 Length=1222 Score E Sequences producing significant alignments: (Bits) Value AT3G03730.1 | Symbols: | F-box family protein with a domain of... 1890 0.0 AT4G12810.1 | Symbols: | F-box family protein | chr4:7522831-7... 429 3e-119 AT1G67160.1 | Symbols: | F-box family protein with a domain of... 331 9e-90 AT3G03726.1 | Symbols: | Protein of unknown function (DUF295) ... 191 2e-47 > AT3G03730.1 | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr3:935139-936320 REVERSE LENGTH=1182 Length=1182 Score = 1890 bits (1023), Expect = 0.0 Identities = 1132/1185 (96%), Gaps = 6/1185 (1%) Strand=Plus/Plus Query 21 ATGAGCGATTCCAACGaaaaaaaGACATGCAACGATTCAAAGCAGCCGATACTTGTCCTG 80 ||||||||||||||| |||||||||||||||||| | |||||||| |||||||||||| Sbjct 1 ATGAGCGATTCCAAC---AAAAAGACATGCAACGATGCGAAGCAGCCAATACTTGTCCTG 57 Query 81 GACTTGGTTAGATTGGTCTTGGAACGCTTGAGCTTTGTTGATTTTCATCGAGCTAGATGT 140 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 58 GACTTGGTTAGATTGGTCTTGGAACGCTTGAGCTTTGTAGATTTTCATCGAGCTAGATGT 117 Query 141 GTTTCTTCAGGATGGTATTCCGCTTCGAAATCATGCATTGGAGGAACAAATCCAACAGCT 200 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 GTTTCTTCAGTATGGTATTCCGCTTCGAAATCATGCATTGGAGGAACAAATCCAACAGCT 177 Query 201 CCATGGATCATCCTCTTTCCAAACGAACATGTGAAAACCAACAACGATTCATGTAAGTTG 260 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 178 CCATGGATCATCCTCTTTCCAAACGAACATGTGAAAACCAACAACGATTCGTGTAAGTCA 237 Query 261 TTTGATCCTCGTGACCATAGTTCATACACAATAAGAGATCTCGGGTTTGATATGGTTAGG 320 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 ATTGATCCTCGTGATCATAGTTCATACACAATAAGAGATCTCGGGTTTGATATGGTTAGG 297 Query 321 AGTCGTTGTTTGGCAAGTTCCGGTAGCTGGTTCCTTATGCTAGACCATAAAACTGATTTT 380 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 298 AGTCGTTGTTTGGCAAGTTCCGGTAGCTGGTTCCTTATGTTAGACCATAAAACTGATTTT 357 Query 381 CATCTCTTGAATCTATTTACTCGAGAGAGAATTCCTCTTCCGTCTCTGGAATCAATTGAT 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 CATCTCTTGAATCTATTTACTCGAGAGAGAATTCCTCTTCCGTCTCTGGAATCAATTGAT 417 Query 441 GGATGGCAGATGAAGTTTGTGAGAACCGGTGACTCTGATTTCGAGATGTCTATGTATTAC 500 |||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 418 GGATTGCAGATGAAGTTTGTGAGAACCGGTGACTGTGGTTTCGAGATGTCTATGTATTAC 477 Query 501 AAAGCACATGGACTTGTTTCTTATGGTAAAAACAGCGATCTTAGAATAAGGGGTGCGGTT 560 ||||| ||||||||| |||||||||||||||||||||||||||||||||| | ||||||| Sbjct 478 AAAGCTCATGGACTTATTTCTTATGGTAAAAACAGCGATCTTAGAATAAGCGATGCGGTT 537 Query 561 TTGTGGGTAGATGAAAAAACCAGAGATTACTTTGTTGTTTGGTTTCATCATAGCACTTTT 620 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 538 TTGTGGGTAGATGAAAAAAACGGAGATTACTTTGTTGTTTGGTTTCATCATAGCACTTTT 597 Query 621 GCATATCACAAGAAAGGAGGTGACAATAATAGCTGGAAAGTGTTTCAACCTTCAAAGCAT 680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 GCATATCACAAGAAAGGAGGTGACAATAATAGCTGGAAAGTGTTTCAACCTTCAAAGCAT 657 Query 681 CAAGGATGCCTCCATATGGTGTATAAAGAAAGCAAACTTTACGTGCTTAGTCCAGCTCGA 740 ||||||||| || | ||||||| ||||||| |||||||||||||||||| |||||||||| Sbjct 658 CAAGGATGCATCAACATGGTGTTTAAAGAAGGCAAACTTTACGTGCTTAATCCAGCTCGA 717 Query 741 AATATTTCTGTGTTTGATTTCTCCGGTGGTCATTCTCCAGTGGAGTATGCAACTCTCCCA 800 |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 718 AATATTTCTGTGTTTGATTTCTCCGGTGGTCATTCTCCAGTGGAATATGCAACTCCCCCA 777 Query 801 TCTCCGAA--A-GATTGTTATGTCAGGAATCTTGCTGTGACATTGTCTGGAGAAGTTTTG 857 |||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 778 TCTCCGAATGATGATTACTATGTCAGGAATCTTGCTGTGACATTGTCTGGAGAAGTTTTG 837 Query 858 ATCATTTCAAGCAATCCAAAGAAATGCTTCTTCACCCTCTACAAGATAGATCCTAAATCA 917 |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 838 ATCATTTCAAGCAATCCAAAGAAATGCTTCGTCAAACTCTACAAGATAGATCCTAAATCA 897 Query 918 TCAAAATGGAGATTAATCAAGTCTATAGGGGACGAAGCATTGATTTTGGACCTAGGAATA 977 ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 898 TCAGAATGGAGATTAATCAAGTCTATAGGAGACGAAGCATTGATTTTGGACCTAGGAATC 957 Query 978 ACGGTTGCAGCCAAAGATGGAGTTATGAGAAATTGCATATATTTTAGTCATGATGATTTA 1037 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 958 ACGGTTGCAGCCAAAGATGGAGTTATGAGAAATTGCATATATTTTAGTCATCATGAGTTA 1017 Query 1038 CATAGATATAAAGGGGTTAGTCTATGCAATGATGATAAGTACGGTATTTGCGTCTACCAT 1097 | |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 1018 CTTAGATATAAAGGGGTTAGTCTATGCAATGATGATAAGTACGGGATTTGCATCTACCAT 1077 Query 1098 ATTAAAACCAAGAAAAAGGTCCAAGTGTTTGAACATCTTACTACTTCATCGCCAATACCA 1157 |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1078 ATTAAAACCAAGAAGAAGGTCCAAGAGTTTGAACATCTTACTACTTCATCGCCAATACTA 1137 Query 1158 TTCAAGGATGCTCGTTGGTTTTTCCCCACTTTTGGTGGAAAGTAG 1202 || |||||||||||||||||||| ||||||||||||||||| ||| Sbjct 1138 TTTAAGGATGCTCGTTGGTTTTTTCCCACTTTTGGTGGAAACTAG 1182 > AT4G12810.1 | Symbols: | F-box family protein | chr4:7522831-7523979 REVERSE LENGTH=1149 Length=1149 Score = 429 bits (232), Expect = 3e-119 Identities = 373/440 (85%), Gaps = 14/440 (3%) Strand=Plus/Plus Query 3 AAGAAACAGAAGAAGGAGATGAGCGATTCCAACGaaaaaaaGACATGC-A--ACGATTC- 58 ||||| |||||||||||||||||||||| | ||| |||||||||| | | | ||||| Sbjct 10 AAGAAGCAGAAGAAGGAGATGAGCGATT-C--CGAGAAAAAGACATTCAATGAAGATTCG 66 Query 59 AAAGCAGCCGATACTTGTCC-TGGACTTGGTTAGATTGGTCTTGGAACGCTTGAGCTTTG 117 ||| || ||||||||| || ||||| |||| |||||| ||||||||||||||||||||| Sbjct 67 AAA-CATTCGATACTTG-CCGTGGACCTGGTAAGATTGATCTTGGAACGCTTGAGCTTTG 124 Query 118 TTGATTTTCATCGAGCTAGATGTGTTTCTTCAGGATGGTAT-TCCGCTTCGAAATCA-TG 175 |||||||||||||||| ||||| ||||||||| ||||||| | ||||| ||| || | Sbjct 125 TTGATTTTCATCGAGCGAGATGCGTTTCTTCAATATGGTATATT-GCTTCCAAAACAGT- 182 Query 176 CATTGGAGGAACAAATCCAACAGCTCCATGGATCATCCTCTTTCCAAACGAACATGTGAA 235 |||||||| ||||||||||||| |||||||| ||||||| |||||||| | | ||||| | Sbjct 183 CATTGGAGTAACAAATCCAACAACTCCATGGCTCATCCTATTTCCAAAAGGAGATGTGGA 242 Query 236 AACCAACAACGATTCATGTAAGTTGTTTGATCCTCGTGACCATAGTTCATACACAATAAG 295 || || || |||||||||||||||| ||||||| ||| | | | |||| | |||| Sbjct 243 AATAAAAAAAGATTCATGTAAGTTGTACGATCCTCATGAAAACAAAACCTACATAGTAAG 302 Query 296 AGATCTCGGGTTTGATATGGTTAGGAGTCGTTGTTTGGCAAGTTCCGGTAGCTGGTTCCT 355 ||| |||||||||||| | |||| ||||||||||||||| |||||||||||||||||||| Sbjct 303 AGACCTCGGGTTTGATTTAGTTACGAGTCGTTGTTTGGCTAGTTCCGGTAGCTGGTTCCT 362 Query 356 TATGCTAGACCATAAAACTGATTTTCATCTCTTGAATCTATTTACTCGAGAGAGAATTCC 415 |||| ||||||||| |||||| |||||||| |||||||| |||||||||| ||| ||||| Sbjct 363 TATGTTAGACCATAGAACTGAATTTCATCTTTTGAATCTGTTTACTCGAGTGAGGATTCC 422 Query 416 TCTTCCGTCTCTGGAATCAA 435 |||||||||||| ||||||| Sbjct 423 TCTTCCGTCTCTAGAATCAA 442 > AT1G67160.1 | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr1:25124819-25127098 REVERSE LENGTH=1353 Length=1353 Score = 331 bits (179), Expect = 9e-90 Identities = 538/700 (77%), Gaps = 69/700 (10%) Strand=Plus/Plus Query 555 GCGGTTTTGTGGGTAGATGAAAAAACCAGAGATTACTTTGTTGTTTGGT-TTC-ATCATA 612 |||||| ||||||||||||| |||| |||||||||||||| ||||| || || || || Sbjct 475 GCGGTTCTGTGGGTAGATGACAAAAGCAGAGATTACTTTG-TGTTTTGTAATCTTTC-TA 532 Query 613 G-CACTTTTGC--AT-ATCACAAGAAAGGAGGTGACAATAATAGCTGGAAAGTGT-TTCA 667 | | | | || || ||||||||| ||||| |||||| |||||||||||||| | |||| Sbjct 533 GTTA-TGTAGCATATCATCACAAGAGAGGAGATGACAACAATAGCTGGAAAGT-TCTTCA 590 Query 668 ACC-TTCAAAGCATCAAGGATGCCTCCATATGGTGTATAAAGAAAGCAAACTTTACGTGC 726 ||| | |||||||||||| || | ||||||||| |||||||||||| |||||| || Sbjct 591 ACCAAT-AAAGCATCAAGGCTGTGTTGATATGGTGTTTAAAGAAAGCAAGCTTTACATGA 649 Query 727 TTAGTCCAGC-TCGAAATAT-T-TCTGTGTTTGATTTCTCCGGTGGTCATTCTCC---AG 780 ||||| || | || ||| | | |||| |||||||||||||||||| |||||| || Sbjct 650 TTAGTGCA-CATC--AATGTCTCACTGTTTTTGATTTCTCCGGTGGTGTTTCTCCAGTAG 706 Query 781 ---TGGAGTATGCAACTCTCCCATC-TC------CG--AA-AG-----AT-TG--TTATG 819 |||| | ||||| | || ||| || | || || || || ||| Sbjct 707 AAATGGAATGTGCAAGTTTCGGATCGTCTGTGTGTGTAAATAGATTTCATATGAAGTATT 766 Query 820 TCAGGAATCTTGCTGTGACATTGTCTGGAGAAGTTTTGATCA---T---T--T-CAA-GC 869 |||| |||||||||||||| |||||||||||||||||||||| | | | || | Sbjct 767 TCAGCAATCTTGCTGTGACTTTGTCTGGAGAAGTTTTGATCATTGTAGGTGGTAAAATGG 826 Query 870 A-A----TCCA-AAG--AAATGCTTCTTCACCCTCTACAAGATAGATCCTAAATCATCA- 920 | | |||| | | |||||| ||||||| || | ||||| ||||| ||||||||| Sbjct 827 ATAGTTCTCCAGAGGCTAAATGCGTCTTCACTGTCAATAAGATGGATCCAAAATCATCAG 886 Query 921 AA-ATGGAG-ATTAATCAAGTCTATAGGGGACGAAGCATTGATTTTGGACCTAGGAATAA 978 || | || | |||||||||||||||||||||| |||||| ||||||| ||||||| | Sbjct 887 AATTTACAGTACTAATCAAGTCTATAGGGGACGAGGCATTGCTTTTGGATTTAGGAATTA 946 Query 979 CGGTTGCAGCCAAAGATGGAGTTATGAGAAATTGCATATATTTTAGTCATGATGATTTA- 1037 ||||| | ||||||||||||||||||||| ||||||||||||||||| ||||| | || Sbjct 947 CGGTTCCGGCCAAAGATGGAGTTATGAGAGATTGCATATATTTTAGTAATGATCA-GTAT 1005 Query 1038 CATAGATATAAAGGGGTTAGTCTATGCAATGATGATAA-G-T-ACGGTATTTGCGTCTAC 1094 ||||||| | ||| |||||||| || ||| | |||| | | || |||||||||| ||| Sbjct 1006 CATAGATGTTGTGGGATTAGTCTACGCGATGGTTATAACGCTGACCGTATTTGCGTTTAC 1065 Query 1095 CATATTAAAACCAAGAAAAAGGTCCAAGTGTTTGAACATCTTACTACTTCATCGCCAATA 1154 || || || | | | |||||||| |||||||||||| |||||||| ||| ||| | Sbjct 1066 CAAATCGGAAGCGATTATGTGGTCCAAGAGTTTGAACATCTAACTACTTCCTCGACAAAA 1125 Query 1155 CCATTCAAGGATGCTCGTTGGTTTTTCCCCACTTTTGGTG 1194 | ||||||||||||||||||||||||||||||||||||| Sbjct 1126 CTTTTCAAGGATGCTCGTTGGTTTTTCCCCACTTTTGGTG 1165 > AT3G03726.1 | Symbols: | Protein of unknown function (DUF295) | chr3:933341-934464 REVERSE LENGTH=870 Length=870 Score = 191 bits (103), Expect = 2e-47 Identities = 151/173 (87%), Gaps = 7/173 (4%) Strand=Plus/Plus Query 895 TCTACAAGATAGATCCTAAATCATCAAAATGGAG-ATTAATCAAGTCTATAGGGGACGAA 953 |||||||| | |||||||| |||||||||||||| | ||||||| ||||||||||||||| Sbjct 644 TCTACAAGTTGGATCCTAAGTCATCAAAATGGAGCA-TAATCAAATCTATAGGGGACGAA 702 Query 954 GCATTGATTTTGGACCTAGGAATAACGGTTGCAGCCAAAGATGGAGTTATGAGAAATTGC 1013 |||||||||||||| || ||||||| |||||||| |||||||||||||||| ||||||| Sbjct 703 GCATTGATTTTGGATCTTGGAATAATTGTTGCAGCAAAAGATGGAGTTATGAAAAATTGC 762 Query 1014 ATATATTTTAGTCATGATGATTTACATAGATATAAAG-GGG-TTAGTCTATGC 1064 |||||||| ||| ||||| |||| |||| | || || ||| ||||||||||| Sbjct 763 ATATATTT-AGTAATGATCATTTTCATA-AG-TACAGTGGGATTAGTCTATGC 812 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60039851820 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5