BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952590

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G34830.1 | Symbols: WRKY35, MEE24, AtWRKY35 | WRKY DNA-bindi...   401    1e-111


> AT2G34830.1 | Symbols: WRKY35, MEE24, AtWRKY35 | WRKY DNA-binding 
protein 35 | chr2:14693756-14696378 REVERSE LENGTH=1367
Length=1367

 Score =  401 bits (217),  Expect = 1e-111
 Identities = 249/265 (94%), Gaps = 0/265 (0%)
 Strand=Plus/Plus

Query  3     TGGAAGAGCGTAAGGAAAATATGGAGTTCGATTATAATGACGTTGAAGATACATATAGAC  62
             ||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||
Sbjct  1037  TGGAAGAGCGTCAGGAAAAGATGGAGTTCGATTATAATGACGTTGAAAATACCTATAGAC  1096

Query  63    CGGAGTTGTTGCGAGAGTTTCAACATCAGCCGGAGGATTTCTTTGCCGATCTCGACGAGC  122
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1097  CGGAGTTGTTGCAAGAGTTTCAACATCAGCCGGAGGATTTCTTTGCCGATCTCGACGAGC  1156

Query  123   TTGAGGGAGATTCTTTGACTATGTTGCTCTCTCACAGTAGCGGCGGAGTTAACATGGAAA  182
             ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct  1157  TTGAGGGAGATTCTTTGACTATGTTGCTCTCTCACAGTAGCGGCGGAGGCAACATGGAAA  1216

Query  183   ACAAAACGACGATTCCAGACGTTTTTAGTGATTTCTTTGACTCCTCCTCCTCCTCAAGGT  242
             |||||||||||||||||||||||||||||||||||||||||  |  |   ||||||||||
Sbjct  1217  ACAAAACGACGATTCCAGACGTTTTTAGTGATTTCTTTGACGACGACGAGTCCTCAAGGT  1276

Query  243   CGTTATAAACATTCTTGTTAATGTA  267
             ||||||||| ||| |||||||||||
Sbjct  1277  CGTTATAAATATTGTTGTTAATGTA  1301



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12365866254


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5