BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952599
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39110.1 | Symbols: | Protein kinase superfamily protein | ... 2069 0.0
AT5G35580.1 | Symbols: | Protein kinase superfamily protein | ... 63.9 4e-09
> AT2G39110.1 | Symbols: | Protein kinase superfamily protein
| chr2:16319664-16321685 FORWARD LENGTH=1531
Length=1531
Score = 2069 bits (1120), Expect = 0.0
Identities = 1275/1351 (94%), Gaps = 6/1351 (0%)
Strand=Plus/Plus
Query 1 TCACAACATTTCAGTCATCCTCATGAATAATTCTACATCAGTGAGGAGGCTGGTTTCGTC 60
||||| |||| || |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 85 TCACAGCATTCCATTCATCCTCATGAATAATTCTACATCAGTGAAGAGGCTGGTTTCATC 144
Query 61 TAAAGCAATGAAATGTTTCTACTTCAGCAAAGACAAAACTCAGGATGATGAAGCTAAGAC 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 TAAGGCAATGAAATGTTTCTACTTCAGCAAAGACAAAACTCAGGATGATGAAGCTAAGAC 204
Query 121 GAGAAAGTTTGGTTCCA-TTACGATGGCTAGAGGAGGATCAGGGTCTGAATTTAACTCTG 179
||||||||||||| || |||||||||||||||||||||||||||||| ||||| || |
Sbjct 205 TAGAAAGTTTGGTT-CAGCTACGATGGCTAGAGGAGGATCAGGGTCTGAGTTTAATTCAG 263
Query 180 ATACAAGTACTGCTACTTCCATTACTTCTTCCTTGCACGTTCTCTCAGAGACACACAGTA 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 264 ATACAAGTACTGCTACTTCCATTACTTCTTCCTTGCACGTCCTCTCAGAGACACACAGTA 323
Query 240 ACAATCTCAAAGTCTTTGCCCTCGATGACCTTAAAACTGCTACCAAAAATTTCAGCCGCT 299
| ||||||||||| |||| |||||||||||||||||| |||||||| || ||||||||||
Sbjct 324 ATAATCTCAAAGTATTTGTCCTCGATGACCTTAAAACCGCTACCAAGAACTTCAGCCGCT 383
Query 300 CATTGATGATCGGTGAAGGTGGCTTTGGCGGTGTCTTTCGTGGCGTGATTCAGAACCCTC 359
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 384 CCTTGATGATCGGTGAAGGTGGCTTTGGTGGTGTCTTTCGTGGCGTGATTCAGAACCCTC 443
Query 360 AAGATTCTCGTAAGAAGATTGAAATTGCAGTTAAACAACTCAGTAGAAGAGGTCTACAGG 419
||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 444 AAGATTCTCGTAAAAAGATTGATATTGCAGTTAAACAACTTAGTAGAAGAGGTCTACAGG 503
Query 420 GTCATAAAGAATGGGTGACAGAGGTAAATGTACTGGGAGTAGTGGAGCATCCGAATCTGG 479
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 504 GGCATAAAGAATGGGTGACAGAGGTAAATGTATTGGGAGTAGTGGAGCATCCGAATCTGG 563
Query 480 TGAAGCTGATCGGTTATTGCGCTGAGGATGATGAGAGAGGGATCCAAAGGCTACTTGTTT 539
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 564 TGAAGCTGATCGGTTATTGCGCTGAGGATGATGAGAGAGGGATCCAACGGCTACTTGTTT 623
Query 540 ACGAATACGTACCAAACAGAAGTGTTCAAGACCATTTATCCAATCGTTTTATTGTCACTC 599
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 624 ACGAATACGTACAAAACAGAAGTGTTCAAGACCATTTATCCAATCGTTTTATAGTCACTC 683
Query 600 CTCTCCCTTGGTCCACCAGATTAAAGATTGCTCAGGACACTGCTCGAGGACTTGCTTATC 659
|||| ||||||||||||||| | ||||||||||| ||||||||| ||||||| |||||||
Sbjct 684 CTCTTCCTTGGTCCACCAGACTGAAGATTGCTCAAGACACTGCTAGAGGACTCGCTTATC 743
Query 660 TTCATGAAGGCATGGAGTTTCAGATCATCTTTAGGGATTTCAAATCCTCCAATATTCTTC 719
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 744 TTCATCAAGGCATGGAGTTTCAGATCATCTTTAGGGATTTCAAATCCTCTAATATCCTTC 803
Query 720 TTGATGAGAATTGGAATGCAAAGCTCTCGGATTTCGGACTGGCTCGAATGGGTCCTTCTG 779
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 804 TTGATGAGAACTGGAATGCAAAACTCTCGGATTTCGGACTGGCTCGAATGGGTCCTTCAG 863
Query 780 ATGGAATCACTCATGTCTCCACTGCGGTTGTAGGGACCATTGGTTATGCAGCACCGGAAT 839
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 864 ATGGAATCACTCACGTTTCCACCGCGGTTGTAGGGACCATTGGTTATGCAGCACCGGAAT 923
Query 840 ATATCCAAACAGGACACCTCACTGCCAAGAGTGACGTGTGGAGCTACGGAATCTTTCTAT 899
| |||||||||||||||||||| || ||||| |||||||||||||||||||||||| |||
Sbjct 924 ACATCCAAACAGGACACCTCACGGCTAAGAGCGACGTGTGGAGCTACGGAATCTTTTTAT 983
Query 900 ATGAACTCATCACAGGAAGACGACCTTTTGACCGTAACCGCCCAAGAAACGAGCAGAATA 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 984 ATGAACTCATCACAGGAAGACGACCTTTTGACCGTAACCGCCCAAGAAACGAGCAGAACA 1043
Query 960 TCCTGGAGTGGATCAGACCACACTTGTCCGACATAAAGAAGTTCAAGATGATCATCGACC 1019
|| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1044 TCTTGGAGTGGATCAGACCACACTTATCCGACATAAAGAAGTTCAAAATGATCATCGACC 1103
Query 1020 CAAGACTTGAAGGAAACTACTACCTCAAATCAGCATTGAAGCTAGCTGCAGTTGCTAACC 1079
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1104 CAAGACTTGAAGGAAACTACTACCTCAAGTCAGCATTAAAGCTAGCTGCAGTTGCTAACC 1163
Query 1080 GGTGTTTGATGGTGAAGGCGAAGGCTAGGCCAACAATGAGTCAGGTTTCAGAGATGTTAG 1139
||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1164 GGTGTTTGATGGTAAAAGCGAAAGCAAGGCCAACAATGAGTCAGGTTTCAGAGATGTTAG 1223
Query 1140 AAAGGATAGTGGAAACATCA---GATGATGCTCCTTCAGGACTGCCATTGATGAAGAGCT 1196
|||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||
Sbjct 1224 AAAGGATAGTGGAAACATCATCAGATGGTGCTCCTTCAGGACTGCCATTGATGAAAAGCT 1283
Query 1197 TGACACCTAAAGCTGCATTCGAGGCCTCAAGAAGAGAGAGAGTTAAAAGAAGATTTGTTG 1256
|||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 1284 TGACACCTAAAGATGCATTCGAAGCCTCAAGAAGGGAGAGAGTTAAGAGAAGATTTGTTG 1343
Query 1257 AACTTTTGATCGGAGAAAATGGTTGTCCCAATTTACCCACTTGGTCTCCTAAACTTGTTA 1316
|||| || || |||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1344 AACTGTTAATTGGAGAAAATGGTTGTCCCAATTTACCTACTTGGTCTCATAAACTTGTTA 1403
Query 1317 CTTCTACTTGATTTTTT-GAGAGAACAAACT 1346
|||||| |||||||||| |||||||||||||
Sbjct 1404 CTTCTATTTGATTTTTTTGAGAGAACAAACT 1434
> AT5G35580.1 | Symbols: | Protein kinase superfamily protein
| chr5:13761965-13763944 FORWARD LENGTH=1593
Length=1593
Score = 63.9 bits (34), Expect = 4e-09
Identities = 41/44 (93%), Gaps = 2/44 (5%)
Strand=Plus/Plus
Query 465 AGCATCCGAATCTGGTGAAGCTGATCGGTTATTGC-GCTGAGGA 507
|||||||||||||||||||||||||||| |||||| || |||||
Sbjct 419 AGCATCCGAATCTGGTGAAGCTGATCGGATATTGCTGC-GAGGA 461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66314919945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5