BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952600
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39120.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 1808 0.0
> AT2G39120.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr2:16321794-16322957 FORWARD LENGTH=1164
Length=1164
Score = 1808 bits (979), Expect = 0.0
Identities = 1109/1171 (95%), Gaps = 11/1171 (1%)
Strand=Plus/Plus
Query 21 ATGCTCTATATTTGCCGCCATGCCAAAACCCTAGCTTCCTCCTGCACCAACCTTACTCAG 80
||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGCTCTCTATTCGCCGCCATGCCAAAACCGTAGCTTCCTCCTGCACCAACCTTACTCAG 60
Query 81 AAACGAACCTACGTCGACGTTTACATGAAATGGAAGAGAGATCCTTATTTCGACAACATC 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAACGAACCTACGTCGACGTTTACATGAAATGGAAGAGAGATCCTTATTTCGACAACATC 120
Query 141 GAACACATTCTCCGATCATCTCAGCTCAAATCCGTCATCGGTCTCAAGAACTGTATCGTC 200
|||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||
Sbjct 121 GAACACATCCTCCGATCATCTCAGCTCAAATCCGTCGTCTCTCTTAAGAACTGTATCGTC 180
Query 201 CAGGATCCTAATCGCTGCATTCCGATATCTGCCATCTCCAAGAAGACGCGTCAATTCGAT 260
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 181 CAGGAACCTAATCGCTGCATTCCGATCTCTGCCATCTCCAAGAAGACTCGTCAATTCGAT 240
Query 261 GTATCAACCAAAATCGCTCAGTTTTTAAGGAAATTTCCGTCAGTCTTTGAGGAGTTCGTT 320
|||||||||||||||||||| || |||||||| ||||| ||| ||||||| |||||||||
Sbjct 241 GTATCAACCAAAATCGCTCACTTCTTAAGGAAGTTTCCTTCAATCTTTGAAGAGTTCGTT 300
Query 321 GGTCCAGAGTATAATCTCCCATGGTTTAGATTGACACCAGAAGCTACAGAGCTCGATAGG 380
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 301 GGTCCAGAGTATAATCTCCCATGGTTTAGATTGACACCAGAAGCAACAGAACTAGATAGG 360
Query 381 CAAGAGAGAATCGTTTACCAAACTTCCGCAGAGGATTTGCGTGATAGGTTGAAGAAATTG 440
||||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 361 CAAGAGAGAGTCGTATACCAAACTTCTGCAGATGATTTGCGTGATAGGTTGAAGAAATTG 420
Query 441 ATTCTGATGAGTGAAGATAATGTTTTGCCACTAAGTATAGTTCAAGGAATGAAATGGTAT 500
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATTCTGATGAGTAAAGATAATGTTTTGCCACTAAGTATAGTTCAAGGAATGAAATGGTAT 480
Query 501 TTAGGTTTGCCTGATGATTACTTGCAATTTCCAGAGATGAATTTAGATTCTTCGTTTAGG 560
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 481 TTAGGTTTACCTGATGATTACTTGCAGTTTCCAGATATGAATTTAGATTCTTCGTTTAGG 540
Query 561 TTTGTGGATATGGAAGATGGAGTTAAAGGTTTAGCAGTAGACTATAATGGAG-A--TAAG 617
||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 541 TTTGTGGATATGGAAGATGGAGTTAAAGGTTTAGCAGTAGATTATAATGGAGGAGATAAG 600
Query 618 GTTTTGTCTGTGTTGCagaagaatgcaatgaagaagagacgaagaagaggagaattg-ga 676
||||||||||||||||||||||||||||||||||||||| | || | | |||| || |
Sbjct 601 GTTTTGTCTGTGTTGCAGAAGAATGCAATGAAGAAGAGA--A-GA-G-G-AGAAGTGAG- 653
Query 677 tttagaagagaTTGAGTTTCCTCTGTTTCCATCAAAAGGTTGTAGATTGAGAGTCAAAAT 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 654 TTTAGAAGAGATTGAGTTTCCTCTGTTTCCATCAAAAGGTTGTAGATTGAGAGTCAAGAT 713
Query 737 TGAAGATTGGTTAAAAGAGTTTCAAAAGCTTCCTTATGTATCACCATATGATGATTATTC 796
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TGAAGATTGGTTAATGGAGTTTCAAAAGCTTCCTTATGTATCACCATATGATGATTATTC 773
Query 797 ATGTTTGGATTCAAGTAGTGATGTAGCAGAGAAGAGAGTTGTTGGGTTTCTTCATGAATT 856
|||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 774 ATGTTTGGATCCAAGTAGTGATATAGCAGAGAAGAGAGTTGTTGGTTTTCTTCATGAATT 833
Query 857 GCTTTGTCTTTTCGTCGAGCATTCCGCAGAGAGGAAGAAGTTGTTATGTCTCAAGAAGCA 916
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 834 GCTTTGTCTTTTCGTTGAGCATTCTGCTGAGAGGAAGAAGTTGTTATGTCTCAAGAAGCA 893
Query 917 TTTTGGATTGCCGCAAAAGGTTCATAAGGCGTTTGAGAGACATCCGCAGATTTTTTACTT 976
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 894 TTTTGGATTGCCGCAAAAGGTTCATAAGGCGTTTGAGAGACATCCGCAGATTTTCTACTT 953
Query 977 GTCTATGAAGAACAAAACTTGTACAGCTATTCTAAGAGAGCCTTATAGAGATAAAGCCAG 1036
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 954 GTCTATGAAGAATAAAACTTGTACAGCTATTCTTAGAGAGCCTTATAGAGATAAAGCTAG 1013
Query 1037 TGTAGAAACACATCCTGTGTTAGCTGTAAGGAAGAAATACATCCAGTTGATGAAGAATTC 1096
||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1014 TGTTGAAACACATCCTGTGTTGGGGGTAAGGAAGAAATACATCCAGTTGATGAAGAATTC 1073
Query 1097 AGAGTTGATTCTGAAGAGTAGAAGGAATCGTTTCGGGTTTAGGGACGAAGGGATTGTAGA 1156
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 1074 AGAGTTGATTCTGAAGAGTCGAAGGAATAGTTTCGGGTTTAGGGACGAAGGGGTTGTAGA 1133
Query 1157 GAAAGATTTGGATTTGGATTTTGAAGGCTAA 1187
||||||||||||||||||||||||||||||
Sbjct 1134 TAAAGATTTGGATTTGGATTTTGAAGGCTAA 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59286843645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5