BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952604
Length=1295
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19100.1 | Symbols: | Protein kinase superfamily protein | ... 2139 0.0
AT1G49580.1 | Symbols: | Calcium-dependent protein kinase (CDP... 1203 0.0
> AT3G19100.1 | Symbols: | Protein kinase superfamily protein
| chr3:6605476-6609295 FORWARD LENGTH=2320
Length=2320
Score = 2139 bits (1158), Expect = 0.0
Identities = 1237/1276 (97%), Gaps = 1/1276 (0%)
Strand=Plus/Plus
Query 20 AGATGACATCTGCAATATCTATAGAGGATGTGAGAAGAGAAGTGAAAATACTGCGGGCGT 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 AGATGACATCTGCAATATCTATAGAGGATGTGAGAAGAGAAGTGAAAATACTGCGGGCGT 809
Query 80 TATCTGGACATCAAAATTTGGTACAATTCTACGATGCGTTCGAGGACAATGCCAACGTTT 139
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 810 TATCTGGACATCAAAATTTGGTACAATTCTATGATGCGTTCGAGGACAATGCCAACGTTT 869
Query 140 ACATCGTTATGGAGTTATGTGGAGGTGGTGAACTCCTTGACAGGATACTAGCAAGGGGAG 199
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 870 ACATCGTTATGGAGTTATGTGGAGGTGGTGAACTTCTTGACAGGATACTAGCAAGGGGAG 929
Query 200 GAAAATACTCTGAAGATGATGCAAAAGCAGTGCTTATACAGATCCTTAACGTTGTAGCTT 259
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 930 GAAAATACTCTGAAGATGATGCAAAAGCAGTGCTTATACAGATCCTTAACGTCGTAGCTT 989
Query 260 TCTGTCATCTCCAAGGAGTTGTTCATCGAGATCTAAAACCAGAGAACTTCTTGTACACTT 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 TCTGTCATCTCCAAGGAGTTGTTCATCGAGATCTAAAACCAGAGAACTTCTTGTACACTT 1049
Query 320 CCAAGGAGGAGAATTCTCTGTTGAAAGTCATAGATTTTGGCTTATCGGATTTTGTCAGAC 379
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1050 CCAAGGAGGAGAATTCTATGTTGAAAGTCATAGATTTTGGCTTATCGGACTTTGTCAGAC 1109
Query 380 CAGACGAAAGATTAAATGACATAGTGGGAAGTGCATATTACGTAGCCCCTGAAGTTCTAC 439
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 CAGACGAAAGACTAAATGATATAGTGGGAAGTGCATATTACGTAGCCCCTGAAGTTCTAC 1169
Query 440 ACAGATCTTATACCACAGAAGCGGATGTATGGAGCATAGGAGTAATAGCATACGTTCTCC 499
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1170 ACAGATCTTATACCACAGAAGCGGATGTATGGAGCATAGGAGTCATAGCATACATTCTCC 1229
Query 500 TATGTGGAAGCCGTCCTTTTTGGGCAAGAACTGAATCAGGAATTTTCAGAGCAGTTCTAA 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 TATGTGGAAGCCGTCCTTTTTGGGCAAGAACTGAATCAGGAATTTTCAGAGCAGTTCTAA 1289
Query 560 AAGCTGATCCGAGTTTTGATGAACCTCCTTGGCCTTCGTTATCCTTTGAGGCAAAAGATT 619
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 AAGCTGATCCCAGTTTTGATGAACCTCCTTGGCCTTCGTTATCCTTTGAGGCAAAAGATT 1349
Query 620 TTGTTAAGAGATTATTGTACAAGGACCCTCGGAAAAGAATGACAGCCTCTCAAGCTTTGA 679
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1350 TTGTTAAGAGATTATTGTACAAGGACCCTCGGAAAAGAATGACTGCATCTCAAGCTTTGA 1409
Query 680 TGCATCCTTGGATCGCGGGTTATAAGAAAATAGATATCCCATTTGATATTCTAATCTTCA 739
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1410 TGCATCCTTGGATCGCGGGTTATAAGAAAATAGATATCCCATTTGATATTCTGATCTTCA 1469
Query 740 AGCAGATCAAAGCATACTTGAGATCTTCGTCTTTGCGCAAAGCTGCTTTGATGGCTCTGT 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 AGCAGATCAAAGCATACTTGAGATCTTCGTCTTTGCGCAAAGCTGCTTTGATGGCTCTGT 1529
Query 800 CCAAGACATTAATTACCAATGAACTTCTTTATCTGAAAGCGCAGTTTGCACTCTTAGCAC 859
|||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1530 CCAAGACATTAACTACCGATGAACTTCTTTATCTGAAAGCGCAGTTTGCACACTTAGCAC 1589
Query 860 CCAACAAAAATGGCCTCATCACTTTAGATAGCATCAAACTGGCACTTGCTACAAATGCAA 919
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1590 CCAACAAAAATGGCCTCATCACTTTAGATAGCATCAGACTGGCACTTGCGACAAATGCAA 1649
Query 920 CAGAAGCAATGAAGGAATCACGGATCCCGGACTTTCTTGCGTTGTTAAATGGACTCCAAT 979
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1650 CAGAAGCAATGAAGGAATCACGGATCCCGGACTTTCTTGCATTGTTAAATGGACTTCAAT 1709
Query 980 ACAAAGGGATGGATTTTGAAGAGTTTTGTGCAGCTTCCATTAGCGTTCATCAGCATGAGT 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1710 ACAAAGGGATGGATTTTGAAGAGTTTTGTGCAGCTTCCATTAGCGTTCATCAGCATGAGT 1769
Query 1040 CTCTTGATTGTTGGGAGCAGAGCATTCGTCATGCTTATGAACTATTCGAAATGAATGGAA 1099
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1770 CTCTTGATTGTTGGGAGCAGAGCATTCGTCATGCTTATGAGCTATTTGAAATGAATGGAA 1829
Query 1100 ACCGAGTTATCGTCATTGAAGAGCTCGCTTCTGAACTTGGTGTTGGATCATCTATCCCGG 1159
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1830 ACCGAGTTATCGTCATCGAAGAACTCGCTTCTGAACTTGGTGTTGGATCATCCATCCCGG 1889
Query 1160 TCCATACCATTCTACATGACTGGATAAGACACACAGATGGGAAGCTGAGTTTCTTGGGTT 1219
| |||||||||||| |||||||||||||||| || || ||||||||||||||||||||||
Sbjct 1890 TTCATACCATTCTAAATGACTGGATAAGACATACTGACGGGAAGCTGAGTTTCTTGGGTT 1949
Query 1220 TTGTCAAACTGTTGCACGGTGTCTCTACTAGACAACCATTAGCGAAAACACGATGAAGAA 1279
||||||||||| ||||||||||||| ||| ||||| | ||||||||||| |||||| |||
Sbjct 1950 TTGTCAAACTGCTGCACGGTGTCTCGACTCGACAATCTTTAGCGAAAACGCGATGAGGAA 2009
Query 1280 AGTTACTCAGGTGTTA 1295
||| |||| |||||||
Sbjct 2010 AGTGACTC-GGTGTTA 2024
> AT1G49580.1 | Symbols: | Calcium-dependent protein kinase (CDPK)
family protein | chr1:18351458-18354619 FORWARD LENGTH=2209
Length=2209
Score = 1203 bits (651), Expect = 0.0
Identities = 1056/1248 (85%), Gaps = 41/1248 (3%)
Strand=Plus/Plus
Query 20 AGATGACATCTGCAATAT-CTATAGAGGATGTGAGAAGAGAAGTGAAAATACTGCGGGCG 78
|||||||| ||||||| | ||||||| ||||||||||| ||||||||||| || | |||
Sbjct 716 AGATGACAACTGCAAT-TGCTATAGAAGATGTGAGAAGGGAAGTGAAAATTCTACAGGCT 774
Query 79 TTATCTGGACATCAA-AATTTGGTACAATTCTACGATGCGTTCGAGGACAATGCCAACGT 137
|||||||||||| || ||| ||||||||||||| ||||| || ||||||||||| |||||
Sbjct 775 TTATCTGGACAT-AAGAATCTGGTACAATTCTATGATGCATTTGAGGACAATGCAAACGT 833
Query 138 TTACATCGTTATGGAGTTATGTGGAGGTGGTGAACTCCTTGACAGGATACTAGCAAGGGG 197
||||| | |||||| |||||| ||||||||| || |||||||| ||||||||||||||
Sbjct 834 CTACATTGCAATGGAGCTATGTGAAGGTGGTGAGCTTCTTGACAGAATACTAGCAAGGGG 893
Query 198 AGGAAAATACTCTGAAG-ATGATGCAAAAGCAGTGCTTATACAGATCCTTAACGTTGTAG 256
||| |||||||| | || |||| |||||| ||||| ||||||| || || || || ||||
Sbjct 894 AGGGAAATACTCAG-AGAATGACGCAAAACCAGTGATTATACAAATTCTGAATGTGGTAG 952
Query 257 CTTTCTGTCATCTCCAAGGAGTTGTTCATCGAGATCTAAAACCAGAGAACTTCTTGTACA 316
||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 953 CTTTCTGTCATTTCCAAGGAGTTGTTCATCGAGACCTTAAACCAGAGAACTTCTTGTACA 1012
Query 317 CTTCCAAGGAGGAGAATTCTCTG-TTGAAAGTC-ATAGATTTTGGCTTATCGGATTTTGT 374
||||||||||||||||||||| | || |||| | ||||| ||||||||||| || |||||
Sbjct 1013 CTTCCAAGGAGGAGAATTCTCAGCTT-AAAG-CGATAGACTTTGGCTTATCAGACTTTGT 1070
Query 375 CAGACCAGACGAAAGATTAAATGACATAGTGGGAAGTGCATATTACGTAGC-CCCTGAAG 433
||||||||| || ||| |||| || ||||||||||||||||| || ||||| ||| ||||
Sbjct 1071 CAGACCAGATGAGAGACTAAACGATATAGTGGGAAGTGCATACTATGTAGCTCCC-GAAG 1129
Query 434 TTCTACACAGATCTTATACCACAGAAGCGGATGTATGGAGCATAGGAGTAATAGCATACG 493
||||||||||||| ||||| |||||||||||||| |||||||| ||||| |||||||||
Sbjct 1130 TTCTACACAGATCATATACAACAGAAGCGGATGTGTGGAGCATCGGAGTCATAGCATACA 1189
Query 494 TTCTCCTATGTGGAAGCCGTCCTTTTTGGGCAAGAACTGAATCAGGAATTTTCAGAGCAG 553
|||| |||||||| |||||||| |||||||||||||||||||| |||||||| ||||| |
Sbjct 1190 TTCTACTATGTGGTAGCCGTCCGTTTTGGGCAAGAACTGAATCCGGAATTTTTAGAGCTG 1249
Query 554 TTCTAAAAGCTGATCCGAGTTTTGATGAACCTCCTTGGCC-TTCGTTATCCTT-TGAGGC 611
|||| |||||||| |||||||| ||||||||||||||||| ||| || || || ||| ||
Sbjct 1250 TTCTTAAAGCTGACCCGAGTTTCGATGAACCTCCTTGGCCCTTC-TTGTC-TTCTGACGC 1307
Query 612 AAAAGATTTTGTTAAGAGATTATTGTACAAGGA-CCCTCGGAAAAGAATGACAGCCTCTC 670
||||| ||||||||| | ||||||| ||||| ||| ||| ||||||| ||||||| |
Sbjct 1308 TAAAGACTTTGTTAAGCGGTTATTGTTTAAGGATCCC-CGGCGAAGAATGTCAGCCTCCC 1366
Query 671 AAGCTTTGATGCATCCTTGGATCGCGGG-TTATAAGAA--A-ATAGA-TATCCCATTT-G 724
|||| |||||||||||||||||| || | |||||| | | || || |||||| ||| |
Sbjct 1367 AAGCCTTGATGCATCCTTGGATC-CGAGCTTATAATACGGACAT-GAATATCCC-TTTCG 1423
Query 725 ATATTCTA-ATCTTCAAGCAGATCAAAGCATACTTGAGATCTTCGTCTTTGCGCAAAGCT 783
|||| || ||||| | |||||| || || |||||| ||||||| || || |||||||||
Sbjct 1424 ATAT-CTTGATCTTTAGGCAGATGAAGGCGTACTTGCGATCTTCTTCATTACGCAAAGCT 1482
Query 784 GCTTTGATGGCTCTGTCCAAGACATTAATTACCAATGAACTTCTTTATCTGAAAGCGCAG 843
||||||| ||| || || ||||| ||||| | ||||| ||||||| |||||| | ||
Sbjct 1483 GCTTTGAGGGCGCTATCGAAGACGTTAATCAAGGATGAAATTCTTTACCTGAAAACTCAA 1542
Query 844 TTTGCACT-CTTAGCACCCAACAAAAATGGCCTCATCACTTTAGATAGCATCA-AACTGG 901
||| | || || ||||| |||||| ||||||| ||||| | |||| ||| | || |||
Sbjct 1543 TTTTCTCTTCTC-GCACCAAACAAAGATGGCCTAATCACAATGGATACCATTAGAA-TGG 1600
Query 902 CACTTGCTA-CAAATGCAACAGAAGCAATGAAGGAATCACGGATCCCGGACTTTCTTGCG 960
||||||| | ||| |||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct 1601 CACTTGCAAGCAA-TGCAACAGAAGCAATGAAAGAATCTCGGATCCCAGAGTTTCTTGCT 1659
Query 961 TTGTTAAATGGACTCCAATACAAAGGGATGGATTTTGAAGAGTTTTGTGCAGCTTCCATT 1020
||| |||||||||| ||||||| ||| ||||||||||||||||||||||||||| | ||
Sbjct 1660 TTGCTAAATGGACTTCAATACAGAGGAATGGATTTTGAAGAGTTTTGTGCAGCTGCTATA 1719
Query 1021 AGCGTTCATCAGCATGAGTCTCTTGATTGTTGGGAGCAGAGCATTCGTCATGCTTATGAA 1080
| |||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 1720 AACGTTCATCAGCACGAGTCGCTTGATTGTTGGGAACAGAGCATTCGACATGCTTATGAG 1779
Query 1081 CTATTCGA-AATGAATGGAAACCGAGTTATCGTCATTGAAGAGCTCGCTTCTGAACTTGG 1139
|| ||||| || |||||||||||||| ||| ||||| ||||| || || |||||||||||
Sbjct 1780 CTTTTCGACAA-GAATGGAAACCGAGCTATTGTCATCGAAGAACTTGCCTCTGAACTTGG 1838
Query 1140 TGTTGGATCATCTATCCCGGTCCATACCA-TTCTACATGACTGGATAAGACACACAGATG 1198
||||||| ||||||| ||||| ||| | | |||||||||| ||||| |||||||| ||||
Sbjct 1839 TGTTGGACCATCTATACCGGTACATTC-AGTTCTACATGATTGGATCAGACACACTGATG 1897
Query 1199 GGAAGCTGAGTTTCTT-GGGTTTTGTCAAACTGTTGCACGGTGTCTCT 1245
| ||||| || ||||| |||||| || |||||||| || || ||||||
Sbjct 1898 GAAAGCTTAGCTTCTTCGGGTTT-GTTAAACTGTTACATGGAGTCTCT 1944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63704491605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5