BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952605
Length=553
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19120.1 | Symbols: | PIF / Ping-Pong family of plant trans... 926 0.0
> AT3G19120.1 | Symbols: | PIF / Ping-Pong family of plant transposases
| chr3:6609412-6611059 REVERSE LENGTH=1648
Length=1648
Score = 926 bits (501), Expect = 0.0
Identities = 537/554 (97%), Gaps = 3/554 (1%)
Strand=Plus/Plus
Query 1 ACGTTTGTGTGAAAGCTCCAGGTGGAGAAGACGACTCTTCTCATTTCAGAGATAGTCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 ACGTTTGTGTGAAAGCTCCAGGTGGAGAAGACGACTCTTCTCATTTCAGAGATAGTCTTC 909
Query 61 TCTATAAGAGGCTTACTTCAGGAGACATTGTTTGGGAGAAAGTTATCAATATTAGAGGTC 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 TATATAAGAGGCTTACTTCAGGAGACATTGTTTGGGAGAAAGTTATCAATATTAGAGGTC 969
Query 121 ATCATGTGAGACCATACATTGTTGGAGATTGGTGTTACCCTCTTCTCTCATTCCTGATGA 180
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 970 ACCATGTGAGACCATACATTGTTGGAGATTGGTGTTATCCTCTTCTCTCATTCCTGATGA 1029
Query 181 CTCCCTTTTCACCAAATGGCTCTGGTTCGCCGCCGGAGAATCTATTCGACGGAATGTTGA 240
|||| ||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||
Sbjct 1030 CTCCATTTTCACCAAATGGCTCTGGTACGCCACCGGAGAATCTATTCGATGGAATGTTGA 1089
Query 241 TGAAAGGAAGGTCAGTTGTGGTGGAAGCTATTGGATTGCTCAAGGCTAGATGGAAGATTC 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 TGAAAGGAAGGTCAGTGGTGGTGGAAGCTATTGGATTGCTCAAGGCTAGATGGAAGATTC 1149
Query 301 TTCAAAGTTTGAATGTTGGAGTGAACCATGCTCCTCAGACTATTGTGGCTTGTTGTGTGT 360
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 TTCAGAGTTTGAATGTTGGTGTGAACCATGCTCCTCAGACTATTGTGGCTTGTTGTGTGT 1209
Query 361 TGCATAATCTTTGTCAGATTGCTAGAGAACCCGAACCGGAGATTTGGAAGGATCCGGATG 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1210 TGCATAATCTTTGTCAGATTGCTAGAGAACCTGAACCGGAGATTTGGAAGGATCCAGATG 1269
Query 421 AAGCTGGAACGCCTGCAAGAGTATTGGAGAGTGAGAGGCAGTTTTACTATTACGGGGAGA 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1270 AAGCTGGAACGCCTGCAAGAGTTTTGGAGAGTGAGAGGCAGTTTTACTATTACGGGGAGA 1329
Query 481 GTTTGAGGCAAGCATTGGCAGAAGATTTGCACCAGAGACTCTCCTCGAGGTAAA-GACAT 539
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1330 GTTTGAGGCAAGCATTGGCAGAAGATTTACACCAGAGACTCTCCTCGAGGTAAAAGACAT 1389
Query 540 GAGAACAGATCTTG 553
|| | |||||||||
Sbjct 1390 GA-A-CAGATCTTG 1401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26523629616
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5