BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952606
Length=746
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35240.1 | Symbols: | plastid developmental protein DAG, pu... 1144 0.0
AT1G32580.1 | Symbols: | plastid developmental protein DAG, pu... 590 8e-168
> AT2G35240.1 | Symbols: | plastid developmental protein DAG,
putative | chr2:14844940-14846304 REVERSE LENGTH=900
Length=900
Score = 1144 bits (619), Expect = 0.0
Identities = 707/750 (94%), Gaps = 4/750 (1%)
Strand=Plus/Plus
Query 1 CATCGCCGGG-AACCACACCAGTCTCAATGGCGAAAACTCTATCCCGATCCACCGCCTCA 59
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 CATCGCCGGGAAACCACACCAGTCTCAATGGCGAAAACTCTATCCCGATCCACCGCCTCA 75
Query 60 CGCATCGCTAATCGTTTATTCTCCACCTCCAAAGCCGCCGCCTCTCCTTCTCCGCTTCCT 119
|| ||||||| ||||| || ||||||||||| |||| ||||||||||||||||||||||
Sbjct 76 TGCGTCGCTAAGCGTTTCTTTTCCACCTCCAATGCCGTCGCCTCTCCTTCTCCGCTTCCT 135
Query 120 TCTCATCTCATCTCTCGTCGATCCTCACCGACGATCTTCCACGCCGTCGGATACATCCCA 179
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 136 TCTCATCTCATCTCTCGTCGATTCTCACCGACGATCTTCCACGCCGTCGGATACATCCCA 195
Query 180 GCTTTGACCCGTTTCACGACGATCCGGACCCGAATGGATAGGTCCGGTGGCTCATATTCG 239
||||||||||| ||||| |||||||||||||| ||||||||||| || ||||||||||||
Sbjct 196 GCTTTGACCCGCTTCACAACGATCCGGACCCGGATGGATAGGTCTGGCGGCTCATATTCG 255
Query 240 CCGCTTAAATCTGGATCGAACTTCAGCGATCGACCACCCACTGAAATGGCGCCGCTATTT 299
||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 256 CCGCTTAAATCCGGATCAAACTTCAGCGATCGACCACCCACTGAAATGGCACCTCTATTT 315
Query 300 CCTGGTTGCGATTACGAGCATTGGCTTATCGTCATGGAGAAGCCCGGCGGCGAAAATGCG 359
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 316 CCTGGTTGCGATTACGAGCATTGGCTTATCGTCATGGAGAAGCCCGGAGGTGAAAATGCT 375
Query 360 CAGAAACAGCAAATGATTGATTGCTATGTTCAAACCCTAGCTAAAATTGTTGGCAGTGAG 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 CAGAAACAGCAAATGATCGATTGCTATGTTCAAACCCTAGCTAAAATTGTTGGCAGTGAG 435
Query 420 GAAGAAGCTAAAAAGAAGATCTACAATGTTTCATGCGAGAGGTATTTTGGGTTTGGCTGT 479
||||| |||| |||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 436 GAAGAGGCTAGAAAGAAGATCTATAATGTTTCGTGTGAGAGGTATTTTGGGTTTGGCTGT 495
Query 480 GAGATTGATGAGGAGACATCAAACAAACTTGAAGGACTTCCTGGTGTTCTATTCGTGCTT 539
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 496 GAGATTGATGAGGAGACATCAAACAAACTCGAAGGACTTCCTGGTGTTCTGTTCGTGCTT 555
Query 540 CCGGACTCTTATGTTGATCCAGAGTTCAAAGATTACGGAGCTGAGCTGTTTGAGAACGGA 599
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||
Sbjct 556 CCGGACTCTTATGTTGATCCAGAGTTCAAAGATTACGGAGCTGAACTGTTTGTGAATGGA 615
Query 600 GAAGTAGTTCCTCGGCCACCGGAGAGACAGAGGAGGATGGTGGAGTTAACGACTCAAAGA 659
|||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 616 GAAGTAGTTCCTCGTCCACCAGAGAGACAGAGGAGGATGGTGGAGTTAACGAATCAAAGA 675
Query 660 GGATCGGATAAACCGAAGTACCATGACCGAACCAGAAATGTCCGACGGAGAGAGAACATG 719
|| ||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 676 GGGTCGGATAAACCAAAGTACCATGACCGAATCAGAAATGTCCGACGGAGGGAGAACATG 735
Query 720 CGTTGACTCTTATT---CTCAGACTCTACG 746
|||||||||||||| |||||||| ||||
Sbjct 736 CGTTGACTCTTATTATTCTCAGACTTTACG 765
> AT1G32580.1 | Symbols: | plastid developmental protein DAG,
putative | chr1:11784057-11785637 FORWARD LENGTH=948
Length=948
Score = 590 bits (319), Expect = 8e-168
Identities = 585/712 (82%), Gaps = 24/712 (3%)
Strand=Plus/Plus
Query 22 TCT-CAATGGCGAAAACTCTATCCCGATCCACCGCCTCACGCATCGCTAATCGTTTATTC 80
||| ||||||||||||| ||| | || ||||| || ||||||||| | || || ||| ||
Sbjct 46 TCTCCAATGGCGAAAACCCTAGCTCGCTCCACAGCGTCACGCATCACCAAGCGCTTAATC 105
Query 81 TCCACCTCCAAAGCCGCCGCCTCTCCTTCTCCGCTTCCTTCTCATCTCATCTCTCGTCGA 140
||||||||| | ||| || ||||||| || ||| ||| | ||| | |||| ||||||
Sbjct 106 TCCACCTCC---GGAGCCACCACTCCTTC-CC-CTT-CTTAT-ATC-C-TCTCCCGTCGA 156
Query 141 TCCTCACCGACGATCTTCCACGCCGTCGGATACATCCCAGCTTTGACCCGTTTCACGACG 200
|| | ||| | ||| ||| |||||||||| |||| | | |||| |||||||| |||
Sbjct 157 TCAACCCCGGTGTTCTCCCATGCCGTCGGATTCATCTCTTCCTTGAATCGTTTCACAACG 216
Query 201 ATCCGGACCCGAATGGATAGGTCCGGTGGCTCATATTCGCCGCTTAAATCTGGATCGAAC 260
|| || || |||||||||||||||||||| || || || || || ||||| || |||||
Sbjct 217 ATTCGAACTCGAATGGATAGGTCCGGTGGATCGTACTCTCCTCTAAAATCCGGTTCGAAT 276
Query 261 TTCAGCGATCGACCACCCACTGAAATGGCGCCGCTATTTCCTGGTTGCGATTACGAGCAT 320
|||||||| ||| |||||||||| ||||||||| | |||||||| |||||||| ||||||
Sbjct 277 TTCAGCGACCGAGCACCCACTGAGATGGCGCCGTTGTTTCCTGGCTGCGATTATGAGCAT 336
Query 321 TGGCTT-ATCGTCATGGAGAAGCCCGGCGGCGAAAATGCGC-A-GAAACAGCAAATGATT 377
||| || || || ||||| || || || |||||||| ||| | || ||||||||||||
Sbjct 337 TGG-TTGATTGTAATGGACAAACCTGGAGGCGAAAA--CGCTACTAAGCAGCAAATGATT 393
Query 378 GATTGCTATGTTCAAACCCTAGCTAAAATTGTTGGCAGTGAGGAAGAAGCTAAAAAGAAG 437
||||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 394 GATTGTTATGTTCAAACCCTAGCTAAAATTATCGGCAGTGAGGAAGAAGCTAAGAAGAAG 453
Query 438 ATCTACAATGTTTCATGCGAGAGGTATTTTGGGTTTGGCTGTGAGATTGATGAGGAGACA 497
|| || ||||| || || || ||||||||||| ||||| |||||||||||||| ||||||
Sbjct 454 ATTTATAATGTATCGTGTGAAAGGTATTTTGGATTTGGTTGTGAGATTGATGAAGAGACA 513
Query 498 TCAAACAAACTTGAAGGACTTCCTGGTGTTCTATTCGTGCTT-CCGGACTCTTATGTTGA 556
|||||||||||||||||||||||||||||||| ||| | || || ||||||||||||||
Sbjct 514 TCAAACAAACTTGAAGGACTTCCTGGTGTTCTCTTCATT-TTACCAGACTCTTATGTTGA 572
Query 557 TCCAGAGTTCAAAGATTACGGAGCTGAGCTGTTTGAGAACGGAGAAGTAGTTCCTCGGCC 616
|| |||| |||||||||||||||||||||||||| ||| |||||| |||||| || ||
Sbjct 573 TCAAGAGAACAAAGATTACGGAGCTGAGCTGTTTGTGAATGGAGAAATAGTTCAACGTCC 632
Query 617 ACCGGAGAGACAGAGGAGGATGGTGGAGTTAACGACTCAAAGAGG-A-TCGGATAAACCG 674
|| ||||||||||| | ||| | ||||||||||| || ||| | | | |||||||
Sbjct 633 TCCAGAGAGACAGAGAAAGATCATTGAGTTAACGACCCAGAGAACCAAT-G-ATAAACCA 690
Query 675 AAGTACCATGACC-GAACCAGAAATGTCCGACGGAGAGAGAACATGCGTTGA 725
|||||||| ||| || ||||| |||||||| | ||||||||||||||||||
Sbjct 691 AAGTACCACGACAAGA-CCAGATATGTCCGAAGAAGAGAGAACATGCGTTGA 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36218819987
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5