BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952608

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G47800.1 | Symbols: ATMRP4, EST3, MRP4, ABCC4 | multidrug re...   435    2e-121


> AT2G47800.1 | Symbols: ATMRP4, EST3, MRP4, ABCC4 | multidrug 
resistance-associated protein 4 | chr2:19574864-19580599 FORWARD 
LENGTH=4847
Length=4847

 Score =  435 bits (235),  Expect = 2e-121
 Identities = 271/289 (94%), Gaps = 0/289 (0%)
 Strand=Plus/Plus

Query  15    CCATTGATGCTCGAAGAAGTTCCGACGCTCTCTCCGGAGCACAAAGCAGAGAGGCTCGCG  74
             ||| ||| ||||||| |||| || ||||| ||||| ||||||||||||||||||||||||
Sbjct  909   CCACTGACGCTCGAACAAGTCCCCACGCTTTCTCCAGAGCACAAAGCAGAGAGGCTCGCG  968

Query  75    CTTCTCTTCGAATCGAGTTGGCCCAAAACTTCGGAGAATTCTAGCCACCCTGTACGTACG  134
             ||||||||||||||||||||||||||| | ||||||||||||||||||||| | ||||||
Sbjct  969   CTTCTCTTCGAATCGAGTTGGCCCAAACCGTCGGAGAATTCTAGCCACCCTATCCGTACG  1028

Query  135   ACTCTACTCCGATGTTTATGGAAGGAGATCCTCTTCACGGCGATTCTAGCCATCGTCCGT  194
             ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct  1029  ACTCTACTCCGATGTTTCTGGAAGGAGATCCTCTTCACCGCGATTCTAGCCATCGTCCGT  1088

Query  195   CTCGGCGTCATGTACGTTGGTCCCGTTCTCATCCAGAGCTTAGTCGATTTCACCTCCGAC  254
             ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct  1089  CTCGGCGTCATGTACGTTGGTCCCGTTCTCATCCAGAGCTTCGTCGATTTCACCTCCGGC  1148

Query  255   AAGAGATCCTCGTTGTGGCAAGGTTATTACCTCGTCCTCATCCTCCTTG  303
             |||||||||||   |||||||||||||||||||||||||||||||||||
Sbjct  1149  AAGAGATCCTCCCCGTGGCAAGGTTATTACCTCGTCCTCATCCTCCTTG  1197



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19855760855


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5