BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952609

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17203.1 | Symbols: GA2OX5 | a pseudogene initially named GA...   353    4e-97


> AT3G17203.1 | Symbols: GA2OX5 | a pseudogene initially named 
GA2ox5 and thought to be a member of the gibberellin 2-oxidase 
enzyme family. It was later shown to have a large DNA insert 
in the putative gene model. | chr3:5870787-5872854 FORWARD 
LENGTH=2068
Length=2068

 Score =  353 bits (191),  Expect = 4e-97
 Identities = 233/253 (92%), Gaps = 3/253 (1%)
 Strand=Plus/Plus

Query  1     ATAATGAGCAACT-G-G-TGATGTATGACATGTCTGTTTGACAGCTCCGCGGTGACTTGT  57
             ||||||||||||| | | |||||||||| |||||||||||||||||| |||||||| |||
Sbjct  1183  ATAATGAGCAACTCGTGATGATGTATGATATGTCTGTTTGACAGCTCTGCGGTGACGTGT  1242

Query  58    TACGTAGAAGCAGTTAAGCAGTTGGCGTGTGAGATCTTAGATCTCACGGCTGAAGGACTT  117
             |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  1243  TACGTAGAAGCAATTAAGCAGTTGGCGTGTGAGATCTTAGACCTCACGGCTGAAGGACTA  1302

Query  118   CGGCTCCCACCTCATACCTTCAGCAAATTAATCAGAGCCGTTGATAGCGACTCAGTTCTT  177
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  1303  CGGCTCCCACCTCATACCTTCAGCAAGTTAATCAGAGCCGTTGATAGCGACTCAGTTCTC  1362

Query  178   AGGTTTAACCACTACCCATCGTCCGATCAATTTCTTAGTGGAGCCAACCTCTCTGATAAG  237
             ||| |||| ||||||||||| ||| ||||||| ||||||||||||||  | ||||||| |
Sbjct  1363  AGGCTTAATCACTACCCATCATCCAATCAATTCCTTAGTGGAGCCAAGGTTTCTGATATG  1422

Query  238   TCTGTGTCATTAC  250
             |||||||||||||
Sbjct  1423  TCTGTGTCATTAC  1435



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12617204999


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5