BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952612

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G49555.1 | Symbols:  | FAD/NAD(P)-binding oxidoreductase fam...   451    2e-126
  AT1G78150.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   126    2e-28 


> AT5G49555.1 | Symbols:  | FAD/NAD(P)-binding oxidoreductase family 
protein | chr5:20107229-20110636 REVERSE LENGTH=1887
Length=1887

 Score =  451 bits (244),  Expect = 2e-126
 Identities = 258/265 (97%), Gaps = 0/265 (0%)
 Strand=Plus/Plus

Query  171  AAGACTACAATGTGGCGCCGGAGCTTCAGTACATTACCGAAGAAGAAATGGGACGCTGTG  230
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  26   AAGACTACAATGTGGCGCCGGAGCTTCAGTACATTACCGAAGAAGAAATGGGACGCGGTG  85

Query  231  GTGATCGGAGGTGGCCACAACGGATTAACAGCCGCGGCTTACCTGGCACGCGGAGGTCTC  290
            ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  86   GTGATCGGAGGTGGCCACAACGGATTAACAGCCGCAGCTTACCTAGCACGCGGAGGTCTC  145

Query  291  TCCGTGGCTGTTCTCGAGCGCCGTCATGTCATCGGTGGCGCGGCAGTGACGGAGGAGATC  350
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  146  TCCGTCGCTGTTCTCGAGCGCCGTCATGTCATCGGTGGCGCGGCAGTGACGGAGGAGATC  205

Query  351  GTTCCTGGATTCAAATTCTCACGCTGCAGTTACCTTCAGAGCTTACTTCGTCCTTGTATC  410
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  206  GTTCCTGGATTCAAATTCTCACGCTGCAGTTACCTTCAGGGCTTACTTCGTCCTTGTATC  265

Query  411  ATTAGAGAATTAGAGTTAGGCAGAC  435
            ||||||||||| |||||||| ||||
Sbjct  266  ATTAGAGAATTGGAGTTAGGTAGAC  290


> AT1G78150.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 
growth stages; BEST Arabidopsis thaliana protein match is: 
unknown protein (TAIR:AT1G35780.1). | chr1:29404880-29406374 
FORWARD LENGTH=1061
Length=1061

 Score =  126 bits (68),  Expect = 2e-28
 Identities = 106/123 (86%), Gaps = 7/123 (6%)
 Strand=Plus/Plus

Query  38   GAAGCATTCCGGTGAGAAAGTCACACACATCCACCGTAGTCCGTAGATATGCTTACTTGG  97
            |||| | ||||||||||||| | ||||||  || || |  ||| |||| | |||||||||
Sbjct  124  GAAGTACTCCGGTGAGAAAG-C-CACACA--CATCG-A--CCGCAGATCTACTTACTTGG  176

Query  98   TCGGAGGTTCCATCGCCGGATTCTCCTTAATCCGCTTCTCGCTCCGCCGTTCGTTCCCAC  157
            ||||| |||||| |||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct  177  TCGGAAGTTCCACCGCCGGATTCTCCTTCCTCCGCTTCTCGCTCCGCCGTTCGTTCCCAC  236

Query  158  CAG  160
            |||
Sbjct  237  CAG  239



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20660044839


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5