BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952615

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G06390.1 | Symbols:  | Uncharacterised protein family (UPF04...   303    5e-82


> AT3G06390.1 | Symbols:  | Uncharacterised protein family (UPF0497) 
| chr3:1938732-1939779 REVERSE LENGTH=853
Length=853

 Score =  303 bits (164),  Expect = 5e-82
 Identities = 191/204 (94%), Gaps = 2/204 (1%)
 Strand=Plus/Plus

Query  1    AAGAGTTATATAATCATCCGATGGCATCTACTGAGAACCCTGACCCAGAAACTGGCAAAT  60
            |||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||
Sbjct  53   AAGAGTTATAGAATCATCTGATGGCGTCTACTGAGAACCCTGACCCTGAAACTGGCAAAT  112

Query  61   CTGAACCGATTCCCGCATCGGCTACAACACCA-CCTCCCTCAGCCGCTAGTTTCCTAGAT  119
            |||||||||||||||| ||||||||| ||||| ||| | |||||||| ||||||||||||
Sbjct  113  CTGAACCGATTCCCGCGTCGGCTACACCACCACCCT-CATCAGCCGCCAGTTTCCTAGAT  171

Query  120  TGTCGTAAAATAGACGTTATAATAAGAGTTCTGCTTTTCTCCGCCACTCTGACTGCTCTT  179
            ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct  172  TGTCGTAAAATAGACATTATAACAAGAGTTCTGCTTTTCTCCGCCACTCTGACTGCTCTT  231

Query  180  ATAGTAATGGTGACCAGCGACCAG  203
            |||||||||||||| |||||||||
Sbjct  232  ATAGTAATGGTGACTAGCGACCAG  255



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14828985955


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5