BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952615 Length=319 Score E Sequences producing significant alignments: (Bits) Value AT3G06390.1 | Symbols: | Uncharacterised protein family (UPF04... 303 5e-82 > AT3G06390.1 | Symbols: | Uncharacterised protein family (UPF0497) | chr3:1938732-1939779 REVERSE LENGTH=853 Length=853 Score = 303 bits (164), Expect = 5e-82 Identities = 191/204 (94%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 1 AAGAGTTATATAATCATCCGATGGCATCTACTGAGAACCCTGACCCAGAAACTGGCAAAT 60 |||||||||| ||||||| |||||| |||||||||||||||||||| ||||||||||||| Sbjct 53 AAGAGTTATAGAATCATCTGATGGCGTCTACTGAGAACCCTGACCCTGAAACTGGCAAAT 112 Query 61 CTGAACCGATTCCCGCATCGGCTACAACACCA-CCTCCCTCAGCCGCTAGTTTCCTAGAT 119 |||||||||||||||| ||||||||| ||||| ||| | |||||||| |||||||||||| Sbjct 113 CTGAACCGATTCCCGCGTCGGCTACACCACCACCCT-CATCAGCCGCCAGTTTCCTAGAT 171 Query 120 TGTCGTAAAATAGACGTTATAATAAGAGTTCTGCTTTTCTCCGCCACTCTGACTGCTCTT 179 ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 172 TGTCGTAAAATAGACATTATAACAAGAGTTCTGCTTTTCTCCGCCACTCTGACTGCTCTT 231 Query 180 ATAGTAATGGTGACCAGCGACCAG 203 |||||||||||||| ||||||||| Sbjct 232 ATAGTAATGGTGACTAGCGACCAG 255 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14828985955 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5