BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952616 Length=256 Score E Sequences producing significant alignments: (Bits) Value AT3G06390.1 | Symbols: | Uncharacterised protein family (UPF04... 355 1e-97 > AT3G06390.1 | Symbols: | Uncharacterised protein family (UPF0497) | chr3:1938732-1939779 REVERSE LENGTH=853 Length=853 Score = 355 bits (192), Expect = 1e-97 Identities = 216/227 (95%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 17 ACA-GGTGATGCTGGGGATTTTGGCGTCTGCAACGGGAACGGCGGGAGGAGTTGCGTACA 75 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 455 ACATGGTGATGCTGGGGATTTTGGCGTCTGCAACGGGAACGGCGGGAGGAGTTGCGTACA 514 Query 76 TAGCGTTGAAAGGAAACAAAGAAGTTGGGTGGAACAAGATTTGTAATGTCTACGACAAGT 135 ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 515 TAGCGTTGAAAGGAAACGAAGAAGTTGGGTGGAACAAGATCTGTAATGTCTACGACAAGT 574 Query 136 TTTGTCGTTACATCGCAACTTCGCTTGCCTTATCTCTCTTTGCTACACTTCTTCTTCTAG 195 ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 575 TTTGTCGTTACATCGCAACTTCGCTTGCCTTATCTCTATTTGCTTCACTTCTTCTTCTAG 634 Query 196 TTTTATCCATTTGCTCAGCTCTCTCCAAGAGAACTCCATGAACAAAA 242 |||||||||| || ||||| |||||||||||||| |||||||||| Sbjct 635 TTTTATCCATCTGGTCAGCACTCTCCAAGAGAAC---ATGAACAAAA 678 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11662117768 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5