BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952616
Length=256
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06390.1 | Symbols: | Uncharacterised protein family (UPF04... 355 1e-97
> AT3G06390.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr3:1938732-1939779 REVERSE LENGTH=853
Length=853
Score = 355 bits (192), Expect = 1e-97
Identities = 216/227 (95%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 17 ACA-GGTGATGCTGGGGATTTTGGCGTCTGCAACGGGAACGGCGGGAGGAGTTGCGTACA 75
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 ACATGGTGATGCTGGGGATTTTGGCGTCTGCAACGGGAACGGCGGGAGGAGTTGCGTACA 514
Query 76 TAGCGTTGAAAGGAAACAAAGAAGTTGGGTGGAACAAGATTTGTAATGTCTACGACAAGT 135
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 515 TAGCGTTGAAAGGAAACGAAGAAGTTGGGTGGAACAAGATCTGTAATGTCTACGACAAGT 574
Query 136 TTTGTCGTTACATCGCAACTTCGCTTGCCTTATCTCTCTTTGCTACACTTCTTCTTCTAG 195
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 575 TTTGTCGTTACATCGCAACTTCGCTTGCCTTATCTCTATTTGCTTCACTTCTTCTTCTAG 634
Query 196 TTTTATCCATTTGCTCAGCTCTCTCCAAGAGAACTCCATGAACAAAA 242
|||||||||| || ||||| |||||||||||||| ||||||||||
Sbjct 635 TTTTATCCATCTGGTCAGCACTCTCCAAGAGAAC---ATGAACAAAA 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11662117768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5