BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952620

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38330.1 | Symbols:  | MATE efflux family protein | chr2:160...   638    0.0  


> AT2G38330.1 | Symbols:  | MATE efflux family protein | chr2:16064503-16067437 
FORWARD LENGTH=1753
Length=1753

 Score =  638 bits (345),  Expect = 0.0
 Identities = 373/387 (96%), Gaps = 0/387 (0%)
 Strand=Plus/Plus

Query  9    GGATTGGTAAAATTGGAATGGAGATTATGTCAATTGCCTTACCTGCTGCATTAGCTTTAG  68
            ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct  283  GGATTGGTAAAATTGGAATGGAGATAATGTCAATTGCATTACCTGCTGCATTAGCTTTAG  342

Query  69   CTGCTGATCCTATAACATCTCTTGTCGACACTGCCTTCGTTGGCCATATTGGTTCTGCAG  128
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  343  CTGCTGATCCTATAACATCTCTTGTCGACACTGCCTTCGTTGGCCATATTGGTTCTGCGG  402

Query  129  AATTAGCTGCAGTAGGAGTCTCAGTTTCTGTATTCAATTTGGTGTCGAAGCTCTTCAATG  188
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  403  AATTAGCTGCAGTAGGAGTGTCAGTTTCTGTATTCAATTTGGTGTCGAAGCTCTTCAATG  462

Query  189  TTCCTTTGCTAAACGTCACAACATCGTTTGTTGCGGAGGAGCAAGCAATTGCTGCTAAAG  248
            ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  463  TTCCTTTACTAAATGTCACAACATCGTTTGTTGCGGAGGAGCAAGCAATTGCTGCTAAGG  522

Query  249  ATGATAATGATTCTACGGAAACAAGCAAGAAAGTGCTGCCTTCTGTTTCAACATCATTAG  308
            |||||||||||||||  |||||||||||||||||||||||||| |||||||| |||||||
Sbjct  523  ATGATAATGATTCTATAGAAACAAGCAAGAAAGTGCTGCCTTCGGTTTCAACTTCATTAG  582

Query  309  TTCTTGCTGCTGGAGTTGGTATTGCAGAGGCGATTGCGCTATCTCTAGGGTCTGATTTCT  368
            ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct  583  TTCTTGCTGCTGGAGTTGGTATTGCAGAGGCCATTGCGCTATCTCTCGGGTCTGATTTCT  642

Query  369  TGATGGACGTCATGGCTATACCTTTTG  395
            ||||||| |||||||||||||||||||
Sbjct  643  TGATGGATGTCATGGCTATACCTTTTG  669



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22856536885


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5