BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952623

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38370.1 | Symbols:  | Plant protein of unknown function (DU...   398    2e-110


> AT2G38370.1 | Symbols:  | Plant protein of unknown function (DUF827) 
| chr2:16072070-16074258 REVERSE LENGTH=1773
Length=1773

 Score =  398 bits (215),  Expect = 2e-110
 Identities = 275/302 (91%), Gaps = 12/302 (4%)
 Strand=Plus/Plus

Query  2     GTCCCTGTCTTGAAGCCAACAATGTCAATAGGGCAAATACTCAGCAAGAAGCTACTTCTT  61
             ||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  1360  GTCCCAGTCTTGAAACCAACAATGTCAATAGGACAAATACTGAGCAAGAAGCTACTTCTT  1419

Query  62    GCAGAGGATTCAGATATGAATGTTGCTAGCGAGAGAAGGAAAATGTCGTTGGGTCAGATG  121
             ||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||
Sbjct  1420  GCAGAGGATTCAGATATGAATGTTGCTAATGAGAGAAGAAAAATGTCGTTGGGTCAGATG  1479

Query  122   CTGGCAAAGAATAGCAATAGTGATAAACCTGTAAGCAAGAGGAGTGAAGGGAAA-AGG-T  179
             || ||||||||||||| |||||||||| ||||||||||||| |||||||||||| ||  |
Sbjct  1480  CTTGCAAAGAATAGCAGTAGTGATAAAACTGTAAGCAAGAGAAGTGAAGGGAAAGAGAAT  1539

Query  180   C-GA------C-AA--CTCGAAAGAGAAAGAGTTTCGGATTTGCTAAGATCTCTGTCTTG  229
               ||      | ||  |||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1540  GAGAAAAGGACGAAGACTCGAAAGAGAAAGAGTTTCGGATTTGCTAAGATCTCTGTGTTG  1599

Query  230   TTGAACaaagagagcaagaataagaagaagaagaaaaagaTAGCTTTGAACTTAAGGTGA  289
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1600  TTGAACAAAGAGAGCAAGAACAAGAAGAAGAAGAAAAAGATAGCTTTGAACTTAAGGTGA  1659

Query  290   TA  291
             ||
Sbjct  1660  TA  1661



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14326308465


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5