BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952632
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14990.1 | Symbols: | Class I glutamine amidotransferase-li... 942 0.0
> AT3G14990.1 | Symbols: | Class I glutamine amidotransferase-like
superfamily protein | chr3:5047400-5049877 FORWARD LENGTH=1545
Length=1545
Score = 942 bits (510), Expect = 0.0
Identities = 562/588 (96%), Gaps = 0/588 (0%)
Strand=Plus/Plus
Query 1 ACTGTAAACCTTTAGAGAACATGGTTAAGAAACAAGACTCTGATGGACGACTTAACGCAG 60
|||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 364 ACTGTAAATCTTTAGAGAACATGGTCAAGAAACAAGACTCTGATGGCCGACTTAACGCAG 423
Query 61 CTATCTGTTGTGCTCCTGCGTTGGCTCTTGGTACTTGGGGTCTACTAGAAGGCAAAAAAG 120
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 424 CTATATGTTGTGCTCCTGCCTTGGCTCTTGGTACTTGGGGTCTACTAGAAGGCAAGAAAG 483
Query 121 CAACGGGTTACCCTGTTTTTATGGAGAAACTTGCAGCTACTTGTGCCACTGCTGTTGAGT 180
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 484 CAACGGGTTACCCTGTTTTTATGGAGAAACTTGCGGCTACTTGTGCAACTGCTGTTGAGT 543
Query 181 CAAGAGTGCAAATAGATGGAAGAATAGTGACTAGTCGTGGACCAGGAACCACCATTGAAT 240
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 544 CAAGAGTGCAAATTGATGGAAGAATAGTGACCAGTCGTGGACCAGGAACCACCATTGAAT 603
Query 241 TCTCCGTCACGCTTATAGAGCAGTTGTTTGGGAAAGAGAAAGCTGATGAAGTCTCTAGTA 300
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 604 TCTCCATCACGCTTATAGAGCAGTTGTTTGGGAAAGAAAAAGCTGATGAAGTCTCCAGTA 663
Query 301 TCTTGCTGCTTCGTCCCAACCCTGGTGAGGAGTTTACTTTTACTGAGCTTAACCAAACGA 360
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 664 TCTTGCTGCTTCGTCCTAACCCTGGTGAGGAGTTTACTTTTACTGAGCTTAACCAAACAA 723
Query 361 CCTGGTCATTCGAAGATACACCACAGATTCTCGTACCCATTGCAGAGGAGTCAGAGGAAA 420
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 ACTGGTCATTTGAAGATACACCACAGATTCTCGTACCCATTGCAGAGGAGTCAGAGGAAA 783
Query 421 TTGAAGCCATTGCGCTTGTAGATATCCTGAGACGGGCAAAAGCAAACGTAGTGATTGCTG 480
||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 784 TTGAAGCTATAGCGCTTGTAGATATCCTGAGGCGGGCAAAAGCAAATGTAGTGATTGCTG 843
Query 481 CAGTTGGTAACAGTTTGGAAGTTGTAGGATCTCGCAAAGCTAAGCTAGTAGCAGAAGTGC 540
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 844 CAGTTGGTAACAGTTTGGAAGTTGAAGGATCTCGCAAAGCTAAGCTAGTAGCAGAAGTTC 903
Query 541 TTCTTGATGAAGTTGCAGAGAAGTCGTTCGATCTGATGGTGTTACCTG 588
|||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 904 TTCTTGATGAGGTTGCAGAGAAGTCGTTTGATCTGATTGTGTTACCTG 951
Score = 329 bits (178), Expect = 2e-89
Identities = 199/209 (95%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 700 CTACTACTCACCCAGTAGTGAGCGACAAACTTTCGGATAAGAGTCACATTGAGCATAGAG 759
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1102 CTACTACTCACCCAGTGGTGAGCGACAAACTTTCGGACAAGAGTCACATTGAGCACAGAG 1161
Query 760 TCGTGGTAGATGGAAATGTCATAACAAGCAGAGCTCCAGGGACTGCAATGGAGTTTTCAC 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 TCGTGGTAGATGGAAATGTCATAACAAGCAGAGCTCCAGGGACTGCAATGGAGTTTTCAC 1221
Query 820 TTGCGATTGTCGAAAAGTTTTACGGGCGAGAGAAAGCACTTCAGCTCGCAAAGGCCACAC 879
|||| |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||
Sbjct 1222 TTGCCATTGTCGAAAAGTTTTACGGGCGAGAGAAAGCTCTTCAGCTCGGAAAGGCAACAC 1281
Query 880 TTGTGTGATTTCCGAACAATGAA-GTATG 907
|||||||||||| ||||||||| |||||
Sbjct 1282 TTGTGTGATTTCA-AACAATGAAAGTATG 1309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44306517654
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5