BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952633
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43290.1 | Symbols: WRKY49, ATWRKY49 | WRKY DNA-binding prot... 1223 0.0
> AT5G43290.1 | Symbols: WRKY49, ATWRKY49 | WRKY DNA-binding protein
49 | chr5:17371838-17373201 REVERSE LENGTH=1092
Length=1092
Score = 1223 bits (662), Expect = 0.0
Identities = 785/845 (93%), Gaps = 6/845 (1%)
Strand=Plus/Plus
Query 1 TTTTCTTGTTCCCATACTCATATGGCAGAAGAAGGTTATCAGTGGACAAGAAGGTGTGGA 60
||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 98 TTTTCTTGTCCCCATACTCATATGGAAGAAGAAGGTTATCAGTGGGCAAGAAGGTGTGGA 157
Query 61 AACGACGCCGTTGAAGATATTTTTGTTAATGAGCCACCTCTATTCTTTCTTCCTCAAGAA 120
||| |||||||||||||| ||||||| ||||||||||||| |||||||| ||||||||
Sbjct 158 AACAACGCCGTTGAAGATCCTTTTGTTTATGAGCCACCTCTTTTCTTTCTGCCTCAAGAC 217
Query 121 CAACATC--AT--A--GGCTCATGCCAAATGAAGATTCCATTACCAACAAGTTCGTCACA 174
||||||| || | ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 218 CAACATCATATGCATGGGCTCATGCCAAATGAAGATTTCATTGCCAACAAGTTCGTCACA 277
Query 175 TCAACACTTTACTCCGGTCCACGAATCCAAGATATCGCAAACGCTCTGGCCTTGGTTGAA 234
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 278 TCAACACTTTACTCCGGTCCACGAATCCAAGATATTGCAAACGCTCTGGCCTTGGTCGAA 337
Query 235 CCCCTGTCCCACCCAGTCCCAGAAATCTCCAAATCAACGGTTCCACGGTTGGAAAGAAGT 294
|||||| |||||||||||| ||||||||| |||||||| ||||| | ||||||||||||
Sbjct 338 CCCCTGACCCACCCAGTCCGAGAAATCTCTAAATCAACAGTTCCTCTTTTGGAAAGAAGT 397
Query 295 ACTTTGAACAAGGTGGATAAGTACACTTTAAAGGTGAAGAATAATAGTAATGGAATGTGT 354
||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 398 ACTTTGAGCAAGGTGGATAGGTACACTTTAAAGGTGAAGAACAATAGTAATGGAATGTGT 457
Query 355 GATGATGGATACAAATGGAGAAAATATGGCCAAAAATCAATCAAAAATAGCCCTAACCCG 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 GATGATGGATACAAATGGAGAAAATATGGCCAAAAATCAATCAAAAATAGCCCTAACCCA 517
Query 415 AGGAGTTATTACAAGTGCACAAACCCAATATGCAATGCTAAGAAGCAAGTGGAGAGATCA 474
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 518 AGGAGTTATTACAAGTGCACAAACCCAATATGCAATGCAAAGAAGCAAGTGGAGAGATCA 577
Query 475 ATTGATGAGCCTAACACATATATCATCACCTACGAAGGTTTCCACTTTCACTATACTTAC 534
||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 578 ATTGATGAGTCTAACACATATATCATTACCTACGAAGGTTTCCACTTCCACTATACTTAC 637
Query 535 CCTTTCTTCCTACCCGATAAGACACATCAATGGCCCAATaaaaaaaCGAAAATACATAAA 594
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 638 CCTTTCTTCCTACCCGATAAGACACGTCAATGGCCCAATAAAAAAACGAAAATACATAAA 697
Query 595 TATTATGCTCAAGAGATGAACAAAGGATCTCAAACCCAAGAAGAAAGCAAAGAAGCCCAA 654
|| |||||||||| ||||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 698 CATAATGCTCAAGATATGAACAAAAAATCTCAAACCCAAGAAGAGAGCAAAGAAGCACAA 757
Query 655 TTAGGTGAGCCCGCCAACCAAAATCAGCCAGTCCATAAGGCCCAAGAAAACACACCGGTA 714
|||||||||| | ||||||||||||| |||||| |||| ||||||||||||||||||| |
Sbjct 758 TTAGGTGAGCTCACCAACCAAAATCATCCAGTCAATAAAGCCCAAGAAAACACACCGGCA 817
Query 715 AATCTCGAAGATGAATTGTTTTTCCCGGTTGATCAGTGTCGACGGCAACAAGGGCTTTTA 774
||||||||||| | ||||||||| ||||||||||||||||| | ||||||||||||| ||
Sbjct 818 AATCTCGAAGAGGGATTGTTTTTTCCGGTTGATCAGTGTCGGCCGCAACAAGGGCTTCTA 877
Query 775 GAAGATGTGGTGGCTCCAGCAATGAAAAATATTCCGACCAAGGACAGTGTTTTGACAGCC 834
||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 878 GAAGATGTGGTAGCTCCGGCAATGAAAAATATTCCTACCAGGGACAGTGTTTTGACAGCT 937
Query 835 TCTTG 839
|||||
Sbjct 938 TCTTG 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47973610385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5