BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952638

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55060.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   281    2e-75


> AT5G55060.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 
plant structures; EXPRESSED DURING: 15 growth stages; BEST 
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58510.1); 
Has 223 Blast hits to 218 proteins in 80 species: 
Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 6; Plants 
- 65; Viruses - 0; Other Eukaryotes - 33 (source: NCBI 
BLink). | chr5:22341952-22346577 FORWARD LENGTH=2293
Length=2293

 Score =  281 bits (152),  Expect = 2e-75
 Identities = 161/165 (98%), Gaps = 1/165 (1%)
 Strand=Plus/Plus

Query  7    ACAGGTGCGCATGATAATGGAGACGGCGCCGCCGTCCTTGGTCTCTAAAGCTAGAACCGC  66
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  112  ACAGGTGCGCACGATAATGGAGACGGCGCCGCCGTCCTTGGTCTCTAAAGCTAGAACCGC  171

Query  67   TTTCAATTCCGCCGCGGCTAAAGCGGAGCGCGTCTTCACTGATCTCAAATCTGATCGAGA  126
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  172  CTTCAATTCCGCCGCGGCTAAAGCGGAGCGCGTCTTCACTGATCTCAAATCTGATCGAGA  231

Query  127  GGAGGAGAAGCAATCGACGAGGGATGTGAATGACTCTCAGGTAGG  171
            |||||||||||||||||||||| |||||||||||||||||| |||
Sbjct  232  GGAGGAGAAGCAATCGACGAGGAATGTGAATGACTCTCAGG-AGG  275



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10606495039


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5