BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952640

Length=256
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G02061.1 | Symbols:  | Nucleotide-diphospho-sugar transferas...   183    5e-46


> AT2G02061.1 | Symbols:  | Nucleotide-diphospho-sugar transferase 
family protein | chr2:498025-499559 FORWARD LENGTH=1227
Length=1227

 Score =  183 bits (99),  Expect = 5e-46
 Identities = 129/144 (90%), Gaps = 0/144 (0%)
 Strand=Plus/Plus

Query  21   ATGAATCTATCGAACCGTTTTGGCTCCAACTCCAAGACGGGGATACCCAACGATTCTTCC  80
            ||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| |
Sbjct  1    ATGAATCTATCGAACCGTTTTGGCTCCAATTCCAAGACGGCGATACTCAACGATTCTTAC  60

Query  81   TCCGACGAGAATCGTTCTTCCTCCGCCGCCACCGCCGCCACCGCCGTCGTAATGCCGCCG  140
            ||||||||||||| |||||||||||||||| ||||||  ||  |||||||||| || |||
Sbjct  61   TCCGACGAGAATCATTCTTCCTCCGCCGCCGCCGCCGTAACTTCCGTCGTAATCCCACCG  120

Query  141  TGCTCCAGCAATGTACTTGGAGCC  164
            |||||| ||||||||||  |||||
Sbjct  121  TGCTCCGGCAATGTACTCCGAGCC  144



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11662117768


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5