BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952661

Length=2242
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATMG00640.1 | Symbols: ORF25 | hydrogen ion transporting ATP sy...  1005    0.0   
  ATMG00650.1 | Symbols: NAD4L | NADH dehydrogenase subunit 4L | ...   560    2e-158
  ATMG00660.1 | Symbols: ORF149 | hypothetical protein | chrM:190...   296    6e-79 
  ATMG01200.1 | Symbols: ORF294 | hypothetical protein | chrM:303...   132    2e-29 
  ATMG00990.1 | Symbols: NAD3 | NADH dehydrogenase 3 | chrM:26064...  69.4    1e-10 
  AT2G07751.1 | Symbols:  | NADH:ubiquinone/plastoquinone oxidore...  67.6    5e-10 


> ATMG00640.1 | Symbols: ORF25 | hydrogen ion transporting ATP 
synthases, rotational mechanism;zinc ion binding | chrM:188084-188662 
REVERSE LENGTH=579
Length=579

 Score = 1005 bits (544),  Expect = 0.0
 Identities = 561/569 (99%), Gaps = 2/569 (0%)
 Strand=Plus/Plus

Query  1620  ATGAGATTGAGT-TCGACGAATATGGATGCTAGAAAGATGTTATTTGCTGCTATTCTATC  1678
             |||||||||||| |  ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1     ATGAGATTGAGTAT-TACGAATATGGATGGTAGAAAGATGTTATTTGCTGCTATTCTATC  59

Query  1679  TATTTGTGCATTAAGTTCGAAGAAGATCTCAATCTATAATGAAGAAATGATAGTAGCTCT  1738
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60    TATTTGTGCATTAAGTTCGAAGAAGATCTCAATCTATAATGAAGAAATGATAGTAGCTCT  119

Query  1739  TTGTTTTATAGGCTTTATCATATTCAGTCGTAAGAGTTTAGGTACGACTTTCAAAGTGAC  1798
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120   TTGTTTTATAGGCTTTATCATATTCAGTCGTAAGAGTTTAGGTACGACTTTCAAAGTGAC  179

Query  1799  TCTCGACGGGAGAATCCAGGCTATTCAGGAAGAATCGCAGCAATTCCCCAATCCTAACGA  1858
             ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180   TCTCGACGGGAGCCTCCAGGCTATTCAGGAAGAATCGCAGCAATTCCCCAATCCTAACGA  239

Query  1859  AGTAGTTCCTCCGGAATCCAATGAACAACAACGATTACTTAGGATCAGCTTGCGAATTTG  1918
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240   AGTAGTTCCTCCGGAATCCAATGAACAACAACGATTACTTAGGATCAGCTTGCGAATTTG  299

Query  1919  TGGCACCGTAGTAGAATCATTACCAATGGCACGCTGTGCGCCTAAGTGCGAAAAGACATT  1978
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  300   TGGCACCGTAGTAGAATCATTACCAATGGCACGCTGTGCGCCTAAGTGCGAAAAGACAGT  359

Query  1979  GCAAGCTTTGTTATGCCGAAACCTAAATGTTAAGTCAGCAACACTTACAAATGCCACTTC  2038
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360   GCAAGCTTTGTTATGCCGAAACCTAAATGTTAAGTCAGCAACACTTACAAATGCCACTTC  419

Query  2039  TTCCCGTCGCATCCGTTTTCAGGACGATCTAGTCACAAAGTTTTACACCTTAGTGGGGAA  2098
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  420   TTCCCGTCGCATCCGTTTTCAGGACGATCTAGTCACAAAGTTTTACACCTTAGTGGGGAA  479

Query  2099  TCAATTTGCCTACTCTTGTATCTCGAAAGCAGAAAGAGTAGAATTCATTCGAGAGAGCTT  2158
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  480   GCAATTTGCCTACTCTTGTATCTCGAAAGCAGAAAGAGTAGAATTCATTCGAGAGAGCTT  539

Query  2159  GGTGGTCTTAAGAATGGTTCggggggggg  2187
             |||||||||||||||||||||||||||||
Sbjct  540   GGTGGTCTTAAGAATGGTTCGGGGGGGGG  568


> ATMG00650.1 | Symbols: NAD4L | NADH dehydrogenase subunit 4L 
| chrM:188929-189231 REVERSE LENGTH=303
Length=303

 Score =  560 bits (303),  Expect = 2e-158
 Identities = 303/303 (100%), Gaps = 0/303 (0%)
 Strand=Plus/Plus

Query  1047  ATGGATCTTATCAAATATTTCACATTTTCTATGATTATTTCTATTTTAGGTATTCGGGGA  1106
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1     ATGGATCTTATCAAATATTTCACATTTTCTATGATTATTTCTATTTTAGGTATTCGGGGA  60

Query  1107  ATCCTCCTTAATAGACGAAATATTCCTATTATGTCAATGCCAATTGAATCAATGTTATTA  1166
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61    ATCCTCCTTAATAGACGAAATATTCCTATTATGTCAATGCCAATTGAATCAATGTTATTA  120

Query  1167  GCTGTGAATTCGAACTTTTTGGTATTTTCCGTTTCTTCGGATGATATGATGGGTCAAGTA  1226
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121   GCTGTGAATTCGAACTTTTTGGTATTTTCCGTTTCTTCGGATGATATGATGGGTCAAGTA  180

Query  1227  TTTGCTTCATTGGTTCCAACGGTGGCAGCTGCGGAATCCGCTATTGGGTTAGCCATTTTC  1286
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181   TTTGCTTCATTGGTTCCAACGGTGGCAGCTGCGGAATCCGCTATTGGGTTAGCCATTTTC  240

Query  1287  GTTATAACTTTCCGAGTCCGAGGTACTATTGCTGTAGAATTTATTAATAGCATTCAAGGT  1346
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241   GTTATAACTTTCCGAGTCCGAGGTACTATTGCTGTAGAATTTATTAATAGCATTCAAGGT  300

Query  1347  TAA  1349
             |||
Sbjct  301   TAA  303


> ATMG00660.1 | Symbols: ORF149 | hypothetical protein | chrM:190104-190553 
REVERSE LENGTH=450
Length=450

 Score =  296 bits (160),  Expect = 6e-79
 Identities = 171/176 (97%), Gaps = 2/176 (1%)
 Strand=Plus/Plus

Query  1    TCCATAGTACCTGCAGCCCCACGGACTTAATATTCCTCATTTTAGAAAGCGGAGGGAAGG  60
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  275  TCCATAGTACCTGCAGCCCCACGGACTTCATATTCCTCATTTTAGAAAGCGGAGGGAAGG  334

Query  61   GATCTCTTTTCTGCAACGGaaaaaaaa--CGGAGCAGATTTGATTCGGCACAACCTAACG  118
            |||||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||||
Sbjct  335  GATCTCTTTTCTGCAACGAAAAAAAAAAACGGAGCAGATTTGACTCGGCACAACCTAACG  394

Query  119  ATACATCCAATACCAATGATCTGTGCCTAGAATGCGTTGCTAGATCTCTGTTCTAA  174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  395  ATACATCCAATACCAATGATCTGTGCCTAGAATGCGTTGCTAGATCTCTGTTCTAA  450


> ATMG01200.1 | Symbols: ORF294 | hypothetical protein | chrM:303836-304720 
REVERSE LENGTH=885
Length=885

 Score =  132 bits (71),  Expect = 2e-29
 Identities = 75/77 (97%), Gaps = 0/77 (0%)
 Strand=Plus/Plus

Query  275  CCCTCCTCGAAGAAAGAGGGTTTCAGTCTCATTCAACCAACTCTCTTTTTGAAGCAGATA  334
            ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  809  CCCGCCTCGAAGAAAGAAGGTTTCAGTCTCATTCAACCAACTCTCTTTTTGAAGCAGATA  868

Query  335  GTTCACGAGATAATTGA  351
            |||||||||||||||||
Sbjct  869  GTTCACGAGATAATTGA  885


> ATMG00990.1 | Symbols: NAD3 | NADH dehydrogenase 3 | chrM:260647-261006 
REVERSE LENGTH=360
Length=360

 Score = 69.4 bits (37),  Expect = 1e-10
 Identities = 61/72 (85%), Gaps = 3/72 (4%)
 Strand=Plus/Plus

Query  365  GATGTCACAATTTGAACCAAAGGC---CTTTTTAGTGATTAGTCTGCTAGTTTCTTTGAT  421
            ||||||| |||||| |||||   |   || ||||||||||||||||||||||||||||||
Sbjct  3    GATGTCAGAATTTGCACCAATTTCTATCTATTTAGTGATTAGTCTGCTAGTTTCTTTGAT  62

Query  422  CTTAGTCGGTGT  433
            | || |||||||
Sbjct  63   CCTACTCGGTGT  74


> AT2G07751.1 | Symbols:  | NADH:ubiquinone/plastoquinone oxidoreductase, 
chain 3 protein | chr2:3270008-3270364 FORWARD LENGTH=357
Length=357

 Score = 67.6 bits (36),  Expect = 5e-10
 Identities = 60/71 (85%), Gaps = 3/71 (4%)
 Strand=Plus/Plus

Query  366  ATGTCACAATTTGAACCAAAGGC---CTTTTTAGTGATTAGTCTGCTAGTTTCTTTGATC  422
            |||||| |||||| |||||   |   || |||||||||||||||||||||||||||||||
Sbjct  1    ATGTCAGAATTTGCACCAATTTCTATCTATTTAGTGATTAGTCTGCTAGTTTCTTTGATC  60

Query  423  TTAGTCGGTGT  433
             || |||||||
Sbjct  61   CTACTCGGTGT  71



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 111244407720


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5