BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952676
Length=10497
Score E
Sequences producing significant alignments: (Bits) Value
ATCG01010.1 | Symbols: NDHF | NADH-Ubiquinone oxidoreductase (c... 3984 0.0
ATCG01180.1 | Symbols: RRN23S.2 | chloroplast-encoded 23S ribos... 3509 0.0
ATCG00950.1 | Symbols: RRN23S.1 | chloroplast-encoded 23S ribos... 3509 0.0
ATCG01000.1 | Symbols: YCF1.1 | Ycf1 protein | chrC:109405-1104... 1879 0.0
ATCG01130.1 | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-1292... 1875 0.0
AT2G07600.1 | Symbols: | pseudogene, NADH dehydrogenase, blas... 1122 0.0
ATMG00370.1 | Symbols: ORF199 | Ycf1 protein | chrM:104954-1055... 926 0.0
AT2G07739.1 | Symbols: | Ycf1 protein | chr2:3495511-3496110 R... 920 0.0
AT5G24065.1 | Symbols: | Pseudogene of AT5G24065 | chr5:813346... 845 0.0
ATCG00920.1 | Symbols: RRN16S.1 | chloroplast-encoded 16S ribos... 209 4e-52
ATCG01210.1 | Symbols: RRN16S.2 | chloroplast-encoded 16S ribos... 209 4e-52
AT2G07706.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 139 5e-31
AT1G64730.1 | Symbols: | pseudogene, putative NADH dehydrogena... 139 5e-31
AT3G32895.1 | Symbols: | transposable element gene | chr3:1343... 104 2e-20
AT1G21945.1 | Symbols: | transposable element gene | chr1:7717... 102 6e-20
AT3G07230.1 | Symbols: | wound-responsive protein-related | ch... 73.1 5e-11
ATCG00940.1 | Symbols: TRNA.1 | tRNA-Ala | chrC:103665-104538 F... 71.3 2e-10
ATCG01190.1 | Symbols: TRNA.2 | tRNA-Ala | chrC:134111-134984 R... 71.3 2e-10
ATCG00930.1 | Symbols: TRNI.2 | tRNA-Ile | chrC:102801-103601 F... 69.4 7e-10
ATCG01200.1 | Symbols: TRNI.3 | tRNA-Ile | chrC:135048-135848 R... 69.4 7e-10
> ATCG01010.1 | Symbols: NDHF | NADH-Ubiquinone oxidoreductase
(complex I), chain 5 protein | chrC:110398-112638 REVERSE LENGTH=2241
Length=2241
Score = 3984 bits (2157), Expect = 0.0
Identities = 2213/2241 (99%), Gaps = 0/2241 (0%)
Strand=Plus/Plus
Query 26 ATGGAACATACATATCAATATTCATGGATCATCCCTTTCATTCCACTTCCAGTACCTATT 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAACATACATATCAATATTCATGGATCATCCCTTTCATTCCACTTCCAGTACCTATT 60
Query 86 TTACTAGGAGTTGGACTTCTCCTTTTTCCGACAGCAACAAAAAACCTTCGACGCATGTGG 145
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TTACTAGGAGTTGGACTTCTCCTTTTTCCGACAGCAACAAAAAACCTTCGCCGCATGTGG 120
Query 146 ACTTTTCTTAGTAtttttttGTTAAGTATAGTTATGATCTTTTCACTCTATCTATCTATT 205
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 ACTTTTCTTAGTATTTTTTTGTTAAGTATAGTTATGATCTTTTCAATCTATCTATCTATT 180
Query 206 CAACAAATTTTTCTAAGTTGCATTCATCAAAATGTATGGTCTTGGACCATAAATAATGAA 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAACAAATTTTTCTAAGTTGCATTCATCAAAATGTATGGTCTTGGACCATAAATAATGAA 240
Query 266 TTTTCTTTTGAGTTCGGTTACTTTATCGATCCACTTACTTCTATTATGTCAATATTAATT 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTTCTTTTGAGTTCGGTTACTTTATCGATCCACTTACTTCTATTATGTCAATATTAATT 300
Query 326 ACAACTGTTGGGATTTTGGTTCTGATTTATAGTGACAATTATATGTCGCATGATCAAGGA 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACAACTGTTGGGATTTTGGTTCTGATTTATAGTGACAATTATATGTCGCATGATCAAGGA 360
Query 386 TATCTGAGATTTTTTGCTTATATGGGtttttttAATACTTCAATGTTAGGATTAGTTACT 445
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TACCTGAGATTTTTTGCTTATATGGGTTTTTTTAATACTTCAATGTTAGGATTAGTTACT 420
Query 446 AGTTCTAATTTGATCCAAGTTTAttttttttGGGAATTAGTTGGAATGTGTTCATATTTA 505
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 AGTTCTAATTTGATCCAAGTTTATTTTTTTTGGGAATTAGTTGGAATGTGTTCGTATTTA 480
Query 506 TTAATAGGTTTTTGGTTCACACGACCTATTGCAGCGAATGCTTGTCAAAAAGCTTTTGTA 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTAATAGGTTTTTGGTTCACACGACCTATTGCAGCGAATGCTTGTCAAAAAGCTTTTGTA 540
Query 566 ACTAATCGTGTAGGGGATTTTGGTTTATTATTAGGAATTTTAGGTCTTTATTGGATAACA 625
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACTAATCGTGTAGGGGATTTTGGTTTATTATTAGGAATTTTAGGTCTTTATTGGATAACT 600
Query 626 GGCAGTTTTGAATTTCAGGATTTGTTCGAAATATTCAATAATTTAATTTTAAATAATAGA 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGCAGTTTTGAATTTCAGGATTTGTTCGAAATATTCAATAATTTAATTTTAAATAATAGA 660
Query 686 GTAAATCTCTTATTCCTTACTTTGTGTGCATTTCTATTATTTGTAGGTCCTATTGCTAAA 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTAAATCTCTTATTCCTTACTTTGTGTGCATTTCTATTATTTGTAGGTCCTATTGCTAAA 720
Query 746 TCCGCACAATTTCCTCTTCATGTATGGTTACCTGATGCCATGGAGGGCCCTACTCCCATT 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCCGCACAATTTCCTCTTCATGTATGGTTACCTGATGCCATGGAGGGCCCTACTCCCATT 780
Query 806 TCGGCTCTTATACATGCTGCTACTATGGTAGCGGCGGGGATTTTTCTTGTAGCTCGTCTT 865
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 TCGGCTCTTATACATGCTGCTACTATGGTAGCGGCGGGTATTTTTCTTGTAGCTCGTCTT 840
Query 866 CTTCCTCTTTTTATAGTTATCCCTTCTATAATGTATATAATATCTTTGATAGGTATAATA 925
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTTCCTCTTTTTATCGTTATCCCTTCTATAATGTATATAATATCTTTGATAGGTATAATA 900
Query 926 ACAGTACTCTTAGGAGCCACTTTAGCTCTTGCTCAAAAAGACATTAAGCGAGGTTTAGCC 985
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 901 ACAGTACTCTTAGGAGCCACTTTAGCTCTTGCTCAAAAAGACATTAAGCGGGGTTTAGCC 960
Query 986 TATTCTACAATGTCTCAACTGGGTTATATGATATTAGCTCTAGGTATGGGGTCTTATCGA 1045
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 961 TATTCTACAATGTCTCAACTCGGTTATATGATGTTAGCTCTAGGTATGGGGTCTTATCGA 1020
Query 1046 TCTGCTTTATTTCATTTGATTACTCATGCTTATTCGAAAGCTTTGTTGTTTTTAGGATCT 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCTGCTTTATTTCATTTGATTACTCATGCTTATTCGAAAGCTTTGTTGTTTTTAGGATCT 1080
Query 1106 GGATCCATTATTCATTCAATGGAAGCTATAGTTGGATATTCTCCCGATAAAAGTCAGAAT 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GGATCCATTATTCATTCAATGGAAGCTATAGTTGGATATTCTCCCGATAAAAGTCAGAAT 1140
Query 1166 ATGATTCTTATGGGTGGTTTGACAAAACATGTCCCGATTACAAAAATGGCCTTTTTAATA 1225
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1141 ATGATTCTTATGGGTGGTTTGACAAAACATGTCCCGATTACAAAAACGGCCTTTTTAATA 1200
Query 1226 GGAACACTCTCTCTTTGTGGTATTcccccccTTGCTTGTTTTTGGTCGAAAGATGAAATT 1285
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1201 GGAACACTCTCTCTTTGTGGTATCCCCCCCCTTGCTTGTTTTTGGTCGAAAGATGAAATT 1260
Query 1286 CTTAATGATAGTTTGTTGTTTTCGCCAATTTTTGCAATAATAGCTTGTTCAACAGCGGGA 1345
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CTTAATGATAGTTTGTTATTTTCGCCAATTTTTGCAATAATAGCTTGTTCAACAGCGGGA 1320
Query 1346 TTAACCGCATTTTATATGTTTCGGATTTATTTACTTACTTTTGAAGGACATTTAAACACT 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TTAACCGCATTTTATATGTTTCGGATTTATTTACTTACTTTTGAAGGACATTTAAACACT 1380
Query 1406 TATTTTCTAAATTACAGTGGaaaaaaaaGTAGCTCCTTCTATTCACTCTCTTTATGGGGT 1465
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1381 TATTTTCTAAATTACAGTGGAAAAAAAAGTGGCTCCTTCTATTCACTCTCTTTATGGGGT 1440
Query 1466 AAAGAAGAAGaaaaaaaaCTTAATAAAAATTTTGGGTTAGTACCATTATTAACAATGAAT 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AAAGAAGAAGAAAAAAAACTTAATAAAAATTTTGGGTTAGTACCATTATTAACAATGAAT 1500
Query 1526 AATaaaaaaaGAGCTTCttttttttGCAATAAAACATATAAAATTAGTAATAATGTAAGA 1585
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1501 AATACAAAAAGAGCTTCTTTTTTTTGCAATAAAACATATAAAATAAGTAATAATGTAAGA 1560
Query 1586 AATCAAATTTTTATTACTGTTGAAAATTTTGGACTTAATACAAGAACTTTCTATTATCCC 1645
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 AATCAAATTTTTATTACTGTTGAAAATTTTGGACTTAATACAAGAACTTTCTATTATCCG 1620
Query 1646 CATGAATCAGACAATACTATTCTATTTCCTATGCTTATTTTGGTTTTATTTACTTTGTTT 1705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 CATGAATCAGACAATACTATTCTATTTCCTATGCTTATTTTGGTTTTATTTACTTTGTTT 1680
Query 1706 ATTGGAGCCATAGGAATTCCTTTCAATCAAGAAGGAATAGACTTTGATATATTATCAAAA 1765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 ATTGGAGCCATAGGAATTCCTTTCAATCAAGAAGGAATAGACTTTGATATATTATCAAAA 1740
Query 1766 TTATTCACGCCGTCAATAAACCTTTTGCATAAAAATTCACAAAATTTTGTAGATTGGTAT 1825
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 TTTTTCACGCCGTCAATAAACCTTTTGCATAAAAATTCACAAAATTTTGTAGATTGGTAT 1800
Query 1826 GAATTTTTGAGAAATGCAACTTTTTCAGTGAGTATAGCtttttttGGAATATTTATAGCA 1885
|||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 1801 GAATTTTTGAGAAATGCAACTTTTTCGGTCAGTATAGCCTTTTTTGGAATATTTATAGCA 1860
Query 1886 TACTGTTTATATAAGCCTTTTTATTCATCTTTATTAAATTTAACCTTACTTAATTCATTT 1945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 TACTGTTTATATAAGCCTTTTTATTCATCTTTATTAAATTTAACCTTACTTAATTCATTT 1920
Query 1946 CAAAAATGGAATTCTAAAAGAATTCGTTGGGAAAAACTAATAAATTTTGTATATAATTGG 2005
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1921 CAAAAATGGAATTCTAAACGAATTCATTGGGAAAAACTAATAAATTTTGTATATAATTGG 1980
Query 2006 TCATATAATCGTGGTTACATAGATGCtttttttAAAACATCTTTAATTGAAAGTATAAGA 2065
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1981 TCATATAATCGTGGTTACATAGATTCTTTTTTTAAAACATCTTTAATTGAAAGTATAAGA 2040
Query 2066 AGATTAGCAAAACAAACGACtttttttGATAAACAAATCATTGATGGAATTACAAATGGA 2125
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2041 AGATTAGCAAAACAAACGACTTTTTTTGATAAACGAATCATTGATGGAATTACAAATGGA 2100
Query 2126 GTAGGTATTACAAGTTTCTTTGTAGGAGAAGTAATAAAATATATAGGTGGAAGCCGCATC 2185
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 2101 GTAGGTATTACAAGTTTCTTTGTAGGAGAAGTAACAAAATATATAGGTGGAAGTCGCATC 2160
Query 2186 TCTTCTTATCTGTTCTTATATTTGTCCTATGTATTTAtttttttAATGATCCTCtttttt 2245
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2161 TCTTCTTATCTGTTCTTATATTTGTCCTATGTATTGATTTTTTTAATGATCCTCTTTTTT 2220
Query 2246 ttttattttgaaaaattctaa 2266
|||||||||||||||||||||
Sbjct 2221 TTTTATTTTGAAAAATTCTAA 2241
> ATCG01180.1 | Symbols: RRN23S.2 | chloroplast-encoded 23S ribosomal
RNA | chrC:131149-133958 REVERSE LENGTH=2810
Length=2810
Score = 3509 bits (1900), Expect = 0.0
Identities = 1902/1903 (99%), Gaps = 0/1903 (0%)
Strand=Plus/Minus
Query 6060 CGGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAG 6119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1903 CGGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAG 1844
Query 6120 GCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGT 6179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 GCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGT 1784
Query 6180 CGCCCGGGCCTGGTCACTGCGACCCCCTTTGTGAGGAGGCACCCCTTCTCCCGAAGTTAC 6239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1783 CGCCCGGGCCTGGTCACTGCGACCCCCTTTGTGAGGAGGCACCCCTTCTCCCGAAGTTAC 1724
Query 6240 GGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACC 6299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 GGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACC 1664
Query 6300 TACCCACCTGTGTCGGTTTCGGGTACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTTTT 6359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 TACCCACCTGTGTCGGTTTCGGGTACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTTTT 1604
Query 6360 CCTGGGAGTATAGCATGGGTTACTTCAGCGCCGTAGCGCCTGGTACTCGAACATTGGCTC 6419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 CCTGGGAGTATAGCATGGGTTACTTCAGCGCCGTAGCGCCTGGTACTCGAACATTGGCTC 1544
Query 6420 GGGGCATTTTCTCTACCCCTTCTTACCCTGAAAAAACAGGGACACCTTGCGTCCTTGAAC 6479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 GGGGCATTTTCTCTACCCCTTCTTACCCTGAAAAAACAGGGACACCTTGCGTCCTTGAAC 1484
Query 6480 CGATAACCATCTTTCGGCTAACCTAGCCTCCTCCGTCCCTCGGGACCAACAAGGGGTAGT 6539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 CGATAACCATCTTTCGGCTAACCTAGCCTCCTCCGTCCCTCGGGACCAACAAGGGGTAGT 1424
Query 6540 ACAGGAATATTCACCTGTTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGGCCCTGAC 6599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 ACAGGAATATTCACCTGTTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGGCCCTGAC 1364
Query 6600 TCACCCTCCGTGGACGAACCTTGCGGAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTC 6659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 TCACCCTCCGTGGACGAACCTTGCGGAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTC 1304
Query 6660 ACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCCACCGCCGCTCGC 6719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 ACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCCACCGCCGCTCGC 1244
Query 6720 GCGGTTGCTTCCCCCTAAGGCGGAACGCTCCCCTACCGATGCATTTTGACATCCCACAGC 6779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 GCGGTTGCTTCCCCCTAAGGCGGAACGCTCCCCTACCGATGCATTTTGACATCCCACAGC 1184
Query 6780 TTCGGCAGATCGCTTAGCCCCGTTCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTAT 6839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 TTCGGCAGATCGCTTAGCCCCGTTCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTAT 1124
Query 6840 TACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCT 6899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 TACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCT 1064
Query 6900 ACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCC 6959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 ACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCC 1004
Query 6960 TCTCGACGATGAAGCTTATCCCCCACCGTCTCACTGGCCGACCTTGACCCCAGTTATTTT 7019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TCTCGACGATGAAGCTTATCCCCCACCGTCTCACTGGCCGACCTTGACCCCAGTTATTTT 944
Query 7020 GAGGTCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCTCGCGGCCCGCACC 7079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GAGGTCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCTCGCGGCCCGCACC 884
Query 7080 GAAACAGTGCTTTACCCCTAGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGA 7139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 GAAACAGTGCTTTACCCCTAGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGA 824
Query 7140 GAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGAT 7199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 GAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGAT 764
Query 7200 TTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCAT 7259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCAT 704
Query 7260 AGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATTGCCCTATGAAGACTCGCTT 7319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 AGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATTGCCCTATGAAGACTCGCTT 644
Query 7320 TCGCTACGGCTCCGGTGGGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATT 7379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 TCGCTACGGCTCCGGTGGGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATT 584
Query 7380 CTTCAACAGGCACGCGGTCAGAGCCCAGGGCTCCTCCCACTGCTTGGGAGCTTACGGTTT 7439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 CTTCAACAGGCACGCGGTCAGAGCCCAGGGCTCCTCCCACTGCTTGGGAGCTTACGGTTT 524
Query 7440 CATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTC 7499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 CATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTC 464
Query 7500 GCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGA 7559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 GCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGA 404
Query 7560 TTCCACGTGCCCCATGCTACTCGGGTCAGAGCATAAGCTAGTGATGCTTTCGGCTACTGG 7619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 TTCCACGTGCCCCATGCTACTCGGGTCAGAGCATAAGCTAGTGATGCTTTCGGCTACTGG 344
Query 7620 ACTCTCGCCATCTAGGGTGCGGCACTCCACCGCTTCGCCTAGCAGCACGACGCTTTTATT 7679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 343 ACTCTCGCCATCTAGGGTGCGGCACTCCACCGCTTCGCCTAGCAGCACGACGCTTTTTTT 284
Query 7680 GCTCTCCCACAACCCCGTTTTCACGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTAC 7739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GCTCTCCCACAACCCCGTTTTCACGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTAC 224
Query 7740 GGGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGCCAGGTTGT 7799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GGGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGCCAGGTTGT 164
Query 7800 CTCTTGCCTGCCCATGGATTCAGCAGCAGTTCAAAAGGTTAACCTATTCGGGAATCTCCG 7859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 CTCTTGCCTGCCCATGGATTCAGCAGCAGTTCAAAAGGTTAACCTATTCGGGAATCTCCG 104
Query 7860 GATCTACGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTACTACGCCCTTCCTCGTC 7919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 GATCTACGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTACTACGCCCTTCCTCGTC 44
Query 7920 TCTGGGTGCCTAGGTATCCACCGTAAGCCTTTCCTCGTTTGAA 7962
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 43 TCTGGGTGCCTAGGTATCCACCGTAAGCCTTTCCTCGTTTGAA 1
> ATCG00950.1 | Symbols: RRN23S.1 | chloroplast-encoded 23S ribosomal
RNA | chrC:104691-107500 FORWARD LENGTH=2810
Length=2810
Score = 3509 bits (1900), Expect = 0.0
Identities = 1902/1903 (99%), Gaps = 0/1903 (0%)
Strand=Plus/Minus
Query 6060 CGGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAG 6119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1903 CGGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAG 1844
Query 6120 GCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGT 6179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 GCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGT 1784
Query 6180 CGCCCGGGCCTGGTCACTGCGACCCCCTTTGTGAGGAGGCACCCCTTCTCCCGAAGTTAC 6239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1783 CGCCCGGGCCTGGTCACTGCGACCCCCTTTGTGAGGAGGCACCCCTTCTCCCGAAGTTAC 1724
Query 6240 GGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACC 6299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 GGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACC 1664
Query 6300 TACCCACCTGTGTCGGTTTCGGGTACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTTTT 6359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 TACCCACCTGTGTCGGTTTCGGGTACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTTTT 1604
Query 6360 CCTGGGAGTATAGCATGGGTTACTTCAGCGCCGTAGCGCCTGGTACTCGAACATTGGCTC 6419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 CCTGGGAGTATAGCATGGGTTACTTCAGCGCCGTAGCGCCTGGTACTCGAACATTGGCTC 1544
Query 6420 GGGGCATTTTCTCTACCCCTTCTTACCCTGAAAAAACAGGGACACCTTGCGTCCTTGAAC 6479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 GGGGCATTTTCTCTACCCCTTCTTACCCTGAAAAAACAGGGACACCTTGCGTCCTTGAAC 1484
Query 6480 CGATAACCATCTTTCGGCTAACCTAGCCTCCTCCGTCCCTCGGGACCAACAAGGGGTAGT 6539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 CGATAACCATCTTTCGGCTAACCTAGCCTCCTCCGTCCCTCGGGACCAACAAGGGGTAGT 1424
Query 6540 ACAGGAATATTCACCTGTTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGGCCCTGAC 6599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 ACAGGAATATTCACCTGTTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGGCCCTGAC 1364
Query 6600 TCACCCTCCGTGGACGAACCTTGCGGAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTC 6659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 TCACCCTCCGTGGACGAACCTTGCGGAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTC 1304
Query 6660 ACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCCACCGCCGCTCGC 6719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 ACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCCACCGCCGCTCGC 1244
Query 6720 GCGGTTGCTTCCCCCTAAGGCGGAACGCTCCCCTACCGATGCATTTTGACATCCCACAGC 6779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 GCGGTTGCTTCCCCCTAAGGCGGAACGCTCCCCTACCGATGCATTTTGACATCCCACAGC 1184
Query 6780 TTCGGCAGATCGCTTAGCCCCGTTCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTAT 6839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 TTCGGCAGATCGCTTAGCCCCGTTCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTAT 1124
Query 6840 TACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCT 6899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 TACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCT 1064
Query 6900 ACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCC 6959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 ACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCC 1004
Query 6960 TCTCGACGATGAAGCTTATCCCCCACCGTCTCACTGGCCGACCTTGACCCCAGTTATTTT 7019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TCTCGACGATGAAGCTTATCCCCCACCGTCTCACTGGCCGACCTTGACCCCAGTTATTTT 944
Query 7020 GAGGTCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCTCGCGGCCCGCACC 7079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GAGGTCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCTCGCGGCCCGCACC 884
Query 7080 GAAACAGTGCTTTACCCCTAGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGA 7139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 GAAACAGTGCTTTACCCCTAGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGA 824
Query 7140 GAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGAT 7199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 GAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGAT 764
Query 7200 TTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCAT 7259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCAT 704
Query 7260 AGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATTGCCCTATGAAGACTCGCTT 7319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 AGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATTGCCCTATGAAGACTCGCTT 644
Query 7320 TCGCTACGGCTCCGGTGGGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATT 7379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 TCGCTACGGCTCCGGTGGGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATT 584
Query 7380 CTTCAACAGGCACGCGGTCAGAGCCCAGGGCTCCTCCCACTGCTTGGGAGCTTACGGTTT 7439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 CTTCAACAGGCACGCGGTCAGAGCCCAGGGCTCCTCCCACTGCTTGGGAGCTTACGGTTT 524
Query 7440 CATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTC 7499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 CATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTC 464
Query 7500 GCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGA 7559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 GCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGA 404
Query 7560 TTCCACGTGCCCCATGCTACTCGGGTCAGAGCATAAGCTAGTGATGCTTTCGGCTACTGG 7619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 TTCCACGTGCCCCATGCTACTCGGGTCAGAGCATAAGCTAGTGATGCTTTCGGCTACTGG 344
Query 7620 ACTCTCGCCATCTAGGGTGCGGCACTCCACCGCTTCGCCTAGCAGCACGACGCTTTTATT 7679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 343 ACTCTCGCCATCTAGGGTGCGGCACTCCACCGCTTCGCCTAGCAGCACGACGCTTTTTTT 284
Query 7680 GCTCTCCCACAACCCCGTTTTCACGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTAC 7739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GCTCTCCCACAACCCCGTTTTCACGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTAC 224
Query 7740 GGGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGCCAGGTTGT 7799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GGGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGCCAGGTTGT 164
Query 7800 CTCTTGCCTGCCCATGGATTCAGCAGCAGTTCAAAAGGTTAACCTATTCGGGAATCTCCG 7859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 CTCTTGCCTGCCCATGGATTCAGCAGCAGTTCAAAAGGTTAACCTATTCGGGAATCTCCG 104
Query 7860 GATCTACGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTACTACGCCCTTCCTCGTC 7919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 GATCTACGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTACTACGCCCTTCCTCGTC 44
Query 7920 TCTGGGTGCCTAGGTATCCACCGTAAGCCTTTCCTCGTTTGAA 7962
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 43 TCTGGGTGCCTAGGTATCCACCGTAAGCCTTTCCTCGTTTGAA 1
> ATCG01000.1 | Symbols: YCF1.1 | Ycf1 protein | chrC:109405-110436
FORWARD LENGTH=1032
Length=1032
Score = 1879 bits (1017), Expect = 0.0
Identities = 1027/1032 (99%), Gaps = 0/1032 (0%)
Strand=Plus/Minus
Query 2228 ttAATGATCCTCttttttttttattttgaaaaattctaaattcgaattttctttatttcc 2287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 TTAATGATCCTCTTTTTTTTTTATTTTGAAAAATTCTAAATTCGAATTTTCTTTATTTCC 973
Query 2288 atctagattttcAGAAACAGTTTTATAGTTATAGTATGTTCGAACGTGGAATTCATCATC 2347
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 ATATAGATTTTCAGAAACAGTTTTATAGTTATAGTATGTTCGAACGTGGAATTCATCATC 913
Query 2348 CTTATTAATTTTGTCTTTTCCATTCACTCGGATTTCTTCCATTTCATCGATTTTGTCCAG 2407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 CTTATTAATTTTGTCTTTTCCATTCACTCGGATTTCTTCCATTTCATCGATTTTGTCCAG 853
Query 2408 ATCTTCCCCTTCTTCCGAAAAAAGAGAAGGAAAAGGAGCTTCTTCGGTGGATACCTCTTG 2467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 ATCTTCCCCTTCTTCCGAAAAAAGAGAAGGAAAAGGAGCTTCTTCGGTGGATACCTCTTG 793
Query 2468 GTCCTGTTTAGTCCCACCCGTTTCTGAGGTTCCTTTTAGTTTCTTAGTAAAAATGGGTGA 2527
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 792 GTCCTGTTTAGTCCCACCCGTTTCTGAGGTTCCTTTAAGTTTCTTAGTAAAAATGGGTGA 733
Query 2528 TGGTATTCTGCCTAAATAGTAGACACAGGTAATAAATAAGAGAATACTAAAGATTCGAGC 2587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TGGTATTCTGCCTAAATAGTAGACACAGGTAATAAATAAGAGAATACTAAAGATTCGAGC 673
Query 2588 CATAGAATTTCTCAATTCTGACACAAGGAACTTATACTTATTAGATCTAATAAGTACATT 2647
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 672 CATAGAATTTCTCAATTCTGACACAAGGAACTTATACTTATTAGATCTAATAACTACATT 613
Query 2648 AGACCTAATAGAATTATTTTGCTGTATCCAGACTAATACCAATCCAACCCATTTCATGAA 2707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 AGACCTAATAGAATTATTTTGCTGTATCCAGACTAATACCAATCCAACCCATTTCATGAA 553
Query 2708 TAAAATGTGACCAATTAACCAACCAACAAAACTACTTGTTACAAATAACATCTTGTTGTT 2767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 TAAAATGTGACCAATTAACCAACCAACAAAACTACTTGTTACAAATAACATCTTGTTGTT 493
Query 2768 GCATCGAAACATATAAATGTTGACTAATCTGGCTAACATTGAACTTGGTAAAATGAAATG 2827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 GCATCGAAACATATAAATGTTGACTAATCTGGCTAACATTGAACTTGGTAAAATGAAATG 433
Query 2828 GTTGAATAATTGAAAAATGAGATTATTCAGGAATACACATTGAATGCGAAGATTACGCAT 2887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 GTTGAATAATTGAAAAATGAGATTATTCAGGAATACACATTGAATGCGAAGATTACGCAT 373
Query 2888 TTCATTTCTGGTAGTAGATCCATAATCAAAAAAGTGTTTGTGATTGTTCCAGAAGAAATG 2947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TTCATTTCTGGTAGTAGATCCATAATCAAAAAAGTGTTTGTGATTGTTCCAGAAGAAATG 313
Query 2948 AAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAAATG 3007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 AAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAAATG 253
Query 3008 CAGAGGCGCATAATAGATCGATATGAACATCATGAGCTGTCCCGCAATAAAACCTGTTGT 3067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 CAGAGGCGCATAATAGATCGATATGAACATCATGAGCTGTCCCGCAATAAAACCTGTTGT 193
Query 3068 TGCTGATACTTTCTTCTCGGTTCCTTCTTCTCCTTCGTCCATAACCCGAGCTCGGAGAAG 3127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 TGCTGATACTTTCTTCTCGGTTCCTTCTTCTCCTTCGTCCATAACCCGAGCTCGGAGAAG 133
Query 3128 GAAGAGATAAGAGGGCCCTATGGAGAATGTGGTCAGAAATCCATAATAGAGTCCGACCAC 3187
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 132 GAAGAGATAAGAGGGCCCTATGGAAAATGTGGTCAGAAATCCATAATAGAGTCCGACCAC 73
Query 3188 AACGACCGAATTGATTATCTTCATGCATAAGGATACTAGATTACCTAGTATAAAAGATTG 3247
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 AACGACCGAATTTATTATCTTCATGCATAAGGATACTAGATTACCTAGTATAAAAGATTG 13
Query 3248 AAAAACCATCAC 3259
||||||||||||
Sbjct 12 AAAAACCATCAC 1
> ATCG01130.1 | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-129244
REVERSE LENGTH=5361
Length=5361
Score = 1875 bits (1015), Expect = 0.0
Identities = 1025/1030 (99%), Gaps = 0/1030 (0%)
Strand=Plus/Minus
Query 2230 AATGATCCTCttttttttttattttgaaaaattctaaattcgaattttctttatttccat 2289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 AATGATCCTCTTTTTTTTTTATTTTGAAAAATTCTAAATTCGAATTTTCTTTATTTCCAT 971
Query 2290 ctagattttcAGAAACAGTTTTATAGTTATAGTATGTTCGAACGTGGAATTCATCATCCT 2349
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 ATAGATTTTCAGAAACAGTTTTATAGTTATAGTATGTTCGAACGTGGAATTCATCATCCT 911
Query 2350 TATTAATTTTGTCTTTTCCATTCACTCGGATTTCTTCCATTTCATCGATTTTGTCCAGAT 2409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 TATTAATTTTGTCTTTTCCATTCACTCGGATTTCTTCCATTTCATCGATTTTGTCCAGAT 851
Query 2410 CTTCCCCTTCTTCCGAAAAAAGAGAAGGAAAAGGAGCTTCTTCGGTGGATACCTCTTGGT 2469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 CTTCCCCTTCTTCCGAAAAAAGAGAAGGAAAAGGAGCTTCTTCGGTGGATACCTCTTGGT 791
Query 2470 CCTGTTTAGTCCCACCCGTTTCTGAGGTTCCTTTTAGTTTCTTAGTAAAAATGGGTGATG 2529
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 790 CCTGTTTAGTCCCACCCGTTTCTGAGGTTCCTTTAAGTTTCTTAGTAAAAATGGGTGATG 731
Query 2530 GTATTCTGCCTAAATAGTAGACACAGGTAATAAATAAGAGAATACTAAAGATTCGAGCCA 2589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 GTATTCTGCCTAAATAGTAGACACAGGTAATAAATAAGAGAATACTAAAGATTCGAGCCA 671
Query 2590 TAGAATTTCTCAATTCTGACACAAGGAACTTATACTTATTAGATCTAATAAGTACATTAG 2649
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 670 TAGAATTTCTCAATTCTGACACAAGGAACTTATACTTATTAGATCTAATAACTACATTAG 611
Query 2650 ACCTAATAGAATTATTTTGCTGTATCCAGACTAATACCAATCCAACCCATTTCATGAATA 2709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 ACCTAATAGAATTATTTTGCTGTATCCAGACTAATACCAATCCAACCCATTTCATGAATA 551
Query 2710 AAATGTGACCAATTAACCAACCAACAAAACTACTTGTTACAAATAACATCTTGTTGTTGC 2769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 AAATGTGACCAATTAACCAACCAACAAAACTACTTGTTACAAATAACATCTTGTTGTTGC 491
Query 2770 ATCGAAACATATAAATGTTGACTAATCTGGCTAACATTGAACTTGGTAAAATGAAATGGT 2829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 ATCGAAACATATAAATGTTGACTAATCTGGCTAACATTGAACTTGGTAAAATGAAATGGT 431
Query 2830 TGAATAATTGAAAAATGAGATTATTCAGGAATACACATTGAATGCGAAGATTACGCATTT 2889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TGAATAATTGAAAAATGAGATTATTCAGGAATACACATTGAATGCGAAGATTACGCATTT 371
Query 2890 CATTTCTGGTAGTAGATCCATAATCAAAAAAGTGTTTGTGATTGTTCCAGAAGAAATGAA 2949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 CATTTCTGGTAGTAGATCCATAATCAAAAAAGTGTTTGTGATTGTTCCAGAAGAAATGAA 311
Query 2950 ACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAAATGCA 3009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 ACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAAATGCA 251
Query 3010 GAGGCGCATAATAGATCGATATGAACATCATGAGCTGTCCCGCAATAAAACCTGTTGTTG 3069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 GAGGCGCATAATAGATCGATATGAACATCATGAGCTGTCCCGCAATAAAACCTGTTGTTG 191
Query 3070 CTGATACTTTCTTCTCGGTTCCTTCTTCTCCTTCGTCCATAACCCGAGCTCGGAGAAGGA 3129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CTGATACTTTCTTCTCGGTTCCTTCTTCTCCTTCGTCCATAACCCGAGCTCGGAGAAGGA 131
Query 3130 AGAGATAAGAGGGCCCTATGGAGAATGTGGTCAGAAATCCATAATAGAGTCCGACCACAA 3189
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 130 AGAGATAAGAGGGCCCTATGGAAAATGTGGTCAGAAATCCATAATAGAGTCCGACCACAA 71
Query 3190 CGACCGAATTGATTATCTTCATGCATAAGGATACTAGATTACCTAGTATAAAAGATTGAA 3249
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 CGACCGAATTTATTATCTTCATGCATAAGGATACTAGATTACCTAGTATAAAAGATTGAA 11
Query 3250 AAACCATCAC 3259
||||||||||
Sbjct 10 AAACCATCAC 1
> AT2G07600.1 | Symbols: | pseudogene, NADH dehydrogenase, blastp
match of 71% identity and 8.1e-159 P-value to GP|17932795|emb|CAC85134.1||AJ312951
NADH dehydrogenase subunit F {Cassinopsis
ilicifolia} | chr2:3188396-3190016 REVERSE LENGTH=1621
Length=1621
Score = 1122 bits (607), Expect = 0.0
Identities = 830/930 (89%), Gaps = 46/930 (5%)
Strand=Plus/Plus
Query 350 ATTTATAGTGACAATTATATGTCGCATGATCAAGGATATCTGAGA-TTTTTTGCTTATAT 408
|||||||||||| |||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 64 ATTTATAGTGACCATTATATGTCGCATGATCAAGGATATCTAATATTTTTTTGCTTATAT 123
Query 409 GGGtttttttAATACTTCAATGTTAGGATTAGTTACTAGTTCTAATTTGATCCAAGTTTA 468
|||||||||||||||| |||||||||| |||| |||||||||||||||| ||||||||||
Sbjct 124 GGGTTTTTTTAATACTCCAATGTTAGG-TTAGGTACTAGTTCTAATTTGTTCCAAGTTTA 182
Query 469 ttttttttGGGAATTAGTTGGAATG-TGTTCATATTTATTAATAGGTTTTTGGTTCACAC 527
|||| || ||||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 183 TTTTCTTGGGGAATTAGTTGGAATGTTG-T-GTATTTATTAATAGGTTTTTGGTTCACAC 240
Query 528 GACCTATTGCAGCGAATGCTTGTCAAAAAGCTTTTGTAACTAATCGTGTAGGGGATTTTG 587
|||||||||||| ||||||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 241 GACCTATTGCAGTGAATGCTTGTCGAAAAGCTTTGGTAACTAATCGTGTAGGAGATTTTG 300
Query 588 GTTTATTATTAGGAATTTTAGGTC--T-TT--AT--T-GG-A----T-AA---CAGGCA- 629
|||||||||||| ||||||||||| | || || | || | | || |||| |
Sbjct 301 GTTTATTATTAGAAATTTTAGGTCTTTATTGGATAATGGGCAGTTTTGAATCTCAGG-AT 359
Query 630 GT-TTTG-AAT-TTC-AGGATTT-GTTCGAAAT-ATTCAAT-AA--T-TTAAT-TTTA-A 677
| |||| ||| ||| | |||| || |||| || | | || | ||| | ||||
Sbjct 360 TTGTTTGAAATATTCAATAATTTAATTTTAAATAATAGAGTAAATCTCTTATTCTTTACT 419
Query 678 AT-AATA-GAGTAAATCTCTTATTCCTTACTTTGTGTGCATTTCTATTATTTGTAGGTCC 735
| || ||||||||||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct 420 TTGTCTACGAGTAAATCTCTTATTCTTTACTTTGTCTGCATTTCTCTTATTTGTAGGTCC 479
Query 736 TATTGCTAAATCCGCACAATTTCCTCTTCATGTATGGTTACCTGATGCCATGGAGGGCCC 795
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 480 TATTCCTAAATCCGCACAATTTCCTCTTCTTGTATGGTTACCTGATGCCATGGAGGGTCC 539
Query 796 TACTCCCATTTCGGCTCTTATACATGCTGCTACTATGGTAGCGGCGGGGATTTTTCTTGT 855
|| |||||||||| |||||||||||||||||| | || | ||||| |||||| ||||
Sbjct 540 TAATCCCATTTCGTCTCTTATACATGCTGCTA--A---TAACAGCGGGTATTTTTGTTGT 594
Query 856 AGCTCGTCTTCTTCCTCTTTTTATAGTTATCCCTTCTATAATGTATATAATATCTTTGAT 915
||||| |||||| ||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 595 AGCTCATCTTCTCCCTCTTTTTATTGTTATCCGTTCTATAATGTATATAATATCTTTGAT 654
Query 916 AGGTATAATAACAGTACTCTTAGGAGCCACTTTAGCTCTTGCTCAAAAAGACATTAAGCG 975
| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 655 ATGTATAATAACAGTACTCTTAGGAGCCACTTTAGCTCTTGTTCAAAAAGACA-TAAGCG 713
Query 976 AGGTTTAGCCTATTCTACAATGTCTCAACTGGGTTATATGATATTAGCTCTAGGTATGGG 1035
|||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 714 -GGTTTAGCCTATTC-ACAATGTCTCAACTCGGTTATATGATGTTAGCTCTAGGTATGGG 771
Query 1036 GTCTTATCGATCTGCTTTATTTCATTTGATTACTCATGCTTATTCGAAAGCTTTGTTGTT 1095
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 772 GTCTTATCGATCTGCTTTATTTCAATTGATTACTCATGCTTATTCGAAAGCTTTGTTGTG 831
Query 1096 TTTAGGATCTGGATCCATTATTCATTCAATGGAAGCTATAGTTGGATATTCTCCCGATAA 1155
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TTTAAGATTTGGATCCATTATTCATTCAATGGAAGCTATAGTTGGATATTCTCCCGATAA 891
Query 1156 AAGTCAGAATATGATTCTTATGGGTGGTTTGACAAAACATGTCCCGATTACAAAAATGGC 1215
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 892 AAGTCAGAATATGATTCTTATGGGTGGTTTGACAAAACATGTCCCGATTACAAAAACGGC 951
Query 1216 CTTTTTAATAGGAACACTCTCTCTTTGTGG 1245
| ||||||||||||||||||||||||||||
Sbjct 952 CATTTTAATAGGAACACTCTCTCTTTGTGG 981
Score = 928 bits (502), Expect = 0.0
Identities = 604/650 (93%), Gaps = 19/650 (3%)
Strand=Plus/Plus
Query 1612 TTT-TGGACTTAATACAAGAACTTTCTATTATCCCCATGAATCAGACAATACTATTCTAT 1670
||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 975 TTTGTGGACTTAATACAAGAACTTTCTATTATCCGCATGAATCAGACAATACTGTTCTAT 1034
Query 1671 TTCCTATGCTTATTTTGGTTTTATTTACTTTGTTTATTGGAGCCATAGGAATTCCTTTCA 1730
|||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| |
Sbjct 1035 TTCCTATGCTTATTTTGGTTTTATTTACCTT-TTTATTGGAACCATAGGAATTCCTTTAA 1093
Query 1731 ATCAAGAAGGAATAGACTTTGATATATTATCAAAATTA-TTCACGCCGTCAATAAACCTT 1789
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1094 ATCAAAAAGGAATAGACTTTGATATATTATCAAAA-TATTTCACGCCGTCAATAAACCTT 1152
Query 1790 TTGCATAAAAATTCACAAAATTTTGTAGATTGGTATGAATTTTTGAGAAATGCAACTTTT 1849
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1153 TTGCATAAAAATTCACAAAATTTTGTAGATTGGTATGAACTTTTGAGAAATGCAACTTTT 1212
Query 1850 TCAGT---GA-GTATAGCtttttttGGAATATTTATAGCATACTGTTTATATAAGCCTTT 1905
|| || | |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 TCGGTCAATATATATAGC-CTTTTTGGAATATTTATAGCATACTGTTTATATAAGCCTTT 1271
Query 1906 TTATTCATCTTTATTAAATTTAACCTTACTTAA-TTCATTTCAAAAATGGAATTCTAAA- 1963
|||||||||||||||||||||||||||||| || |||||||| |||||| ||| |||||
Sbjct 1272 TTATTCATCTTTATTAAATTTAACCTTACT-AAGTTCATTTCCAAAATGAAATCCTAAAC 1330
Query 1964 AGAATTCGTTGGGAAAAACTAATAAATTTTGTATATAATTGGTCATATAATCGTGGTTAC 2023
| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1331 A-AATTCATTGGGAAAAACTATTAAATTTTGTATATAATTGGTCATATAATCGTGGTTAC 1389
Query 2024 ATAGATGCtttttttAAAA-CATCTTTAATTGAAAGTATAAGAAGATTAGCAAAACAAAC 2082
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 ATAGATTCTTTTTTTAAAAACATCTTTAATTGAAAGTATAAGAAGATTAGCAAAACAAAC 1449
Query 2083 GACtttttttGATAAACA-AATCATTGATGGAATTACAAATGGAGTAGGTATTACAAGTT 2141
|||||||||||||||| | ||||||||||||||||||||||||||||||||||| || |
Sbjct 1450 GACTTTTTTTGATAAA-AGAATCATTGATGGAATTACAAATGGAGTAGGTATTAAAAAAT 1508
Query 2142 -TCTTTGTAGGAGAAGTAATAAAATATATAGGTGGAAGCCGCATCTCTTCTTATCTGTTC 2200
| |||||||||||||||| |||||||||||||||||| ||||| ||||||||| |||||
Sbjct 1509 AT-TTTGTAGGAGAAGTAACAAAATATATAGGTGGAAGTCGCATTTCTTCTTATATGTTC 1567
Query 2201 TTATATTTGTCCTATGTATTTAtttttttAATGATCCTCtttt-tttttt 2249
||||| |||||||||||||| ||||||||||||||||| |||| ||||||
Sbjct 1568 TTATAGTTGTCCTATGTATTGATTTTTTTAATGATCCTTTTTTGTTTTTT 1617
> ATMG00370.1 | Symbols: ORF199 | Ycf1 protein | chrM:104954-105553
REVERSE LENGTH=600
Length=600
Score = 926 bits (501), Expect = 0.0
Identities = 523/533 (98%), Gaps = 3/533 (1%)
Strand=Plus/Minus
Query 2727 CAACCAACAAAACTACTTGTTACAAATAACATCTTGTTGTTGCATCGAAACATATAAATG 2786
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CAAACAACAAAACTACTTGTTACAAATAACATCTTGTTGTTGCATCGAAACATATAAATG 474
Query 2787 TTGACTAATCTGGCTAACATTGAACTTGGTAAAATGAAATGGTTGAATAATTGAAAAATG 2846
|| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 473 TTTACTAATCTGGCTAACATTGAACTTGGTAAAATTAAATGGTTGAATAATTTAAAAATT 414
Query 2847 AGATTATTCAGGAATACACATTGAATGCGAAGATTACGCATTTCATTTCTGGTAGTAGAT 2906
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AGATTATTCGGGAATACACATTGAATGCGAAGATTACGCATTTCATTTCTGGTAGTAGAT 354
Query 2907 CCATAATCAAAAAAGTGTTTGTGATTGTTCC---AGAAGAAATGAAACAAAAGATACGGT 2963
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 353 CCATAATCAAAAAAGTGTTTGTGATTGTTCCAGAAGAAGAAATGAAACAAAAGATACGGT 294
Query 2964 AGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAAATGCAGAGGCGCATAATAG 3023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 AGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAAATGCAGAGGCGCATAATAG 234
Query 3024 ATCGATATGAACATCATGAGCTGTCCCGCAATAAAACCTGTTGTTGCTGATACTTTCTTC 3083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 ATCGATATGAACATCATGAGCTGTCCCGCAATAAAACCTGTTGTTGCTGATACTTTCTTC 174
Query 3084 TCGGTTCCTTCTTCTCCTTCGTCCATAACCCGAGCTCGGAGAAGGAAGAGATAAGAGGGC 3143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TCGGTTCCTTCTTCTCCTTCGTCCATAACCCGAGCTCGGAGAAGGAAGAGATAAGAGGGC 114
Query 3144 CCTATGGAGAATGTGGTCAGAAATCCATAATAGAGTCCGACCACAACGACCGAATTGATT 3203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 CCTATGGAGAATGTGGTCAGAAATCCATAATAGAGTCCGACCACAACGACCGAATTGATT 54
Query 3204 ATCTTCATGCATAAGGATACTAGATTACCTAGTATAAAAGATTGAAAAACCAT 3256
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 53 ATCTTCATGCATAAGTATACTAGATTACCTAGTATAAAAGATTGAAAAACCAT 1
> AT2G07739.1 | Symbols: | Ycf1 protein | chr2:3495511-3496110
REVERSE LENGTH=600
Length=600
Score = 920 bits (498), Expect = 0.0
Identities = 522/533 (98%), Gaps = 3/533 (1%)
Strand=Plus/Minus
Query 2727 CAACCAACAAAACTACTTGTTACAAATAACATCTTGTTGTTGCATCGAAACATATAAATG 2786
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CAAACAACAAAACTACTTGTTACAAATAACATCTTGTTGTTGCATCGAAACATATAAATG 474
Query 2787 TTGACTAATCTGGCTAACATTGAACTTGGTAAAATGAAATGGTTGAATAATTGAAAAATG 2846
|| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 473 TTTACTAATCTGGCTAACATTGAACTTGGTAAAATTAAATGGTTGAATAATTTAAAAATT 414
Query 2847 AGATTATTCAGGAATACACATTGAATGCGAAGATTACGCATTTCATTTCTGGTAGTAGAT 2906
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AGATTATTCGGGAATACACATTGAATGCGAAGATTACGCATTTCATTTCTGGTAGTAGAT 354
Query 2907 CCATAATCAAAAAAGTGTTTGTGATTGTTCC---AGAAGAAATGAAACAAAAGATACGGT 2963
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 353 CCATAATCAAAAAAGTGTTTGTGATTGTTCCAGAAGAAGAAATGAAACAAAAGATACGGT 294
Query 2964 AGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAAATGCAGAGGCGCATAATAG 3023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 AGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAAATGCAGAGGCGCATAATAG 234
Query 3024 ATCGATATGAACATCATGAGCTGTCCCGCAATAAAACCTGTTGTTGCTGATACTTTCTTC 3083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 ATCGATATGAACATCATGAGCTGTCCCGCAATAAAACCTGTTGTTGCTGATACTTTCTTC 174
Query 3084 TCGGTTCCTTCTTCTCCTTCGTCCATAACCCGAGCTCGGAGAAGGAAGAGATAAGAGGGC 3143
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 173 TCGGTTCCTTCTTCTCCTTCGTCCATAACCCGAGCTCGGAGAAGGAAGAGATAAAAGGGC 114
Query 3144 CCTATGGAGAATGTGGTCAGAAATCCATAATAGAGTCCGACCACAACGACCGAATTGATT 3203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 CCTATGGAGAATGTGGTCAGAAATCCATAATAGAGTCCGACCACAACGACCGAATTGATT 54
Query 3204 ATCTTCATGCATAAGGATACTAGATTACCTAGTATAAAAGATTGAAAAACCAT 3256
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 53 ATCTTCATGCATAAGTATACTAGATTACCTAGTATAAAAGATTGAAAAACCAT 1
> AT5G24065.1 | Symbols: | Pseudogene of AT5G24065 | chr5:8133460-8134077
FORWARD LENGTH=618
Length=618
Score = 845 bits (457), Expect = 0.0
Identities = 550/594 (93%), Gaps = 10/594 (2%)
Strand=Plus/Minus
Query 2706 AATAAAATGTGACC-AATTAACCAACCAACAAAACTACTTGTTACAAATAACATCTTGTT 2764
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 585 AATAAAATGTGACCAAATTAACCAACCAACAAAACTACTTGTTACAAATAACATTTTATT 526
Query 2765 GTTGCATCGAAACATATAAATGTTGACTAATCTGGCTAACATTGAACTTGGTAAAATGAA 2824
||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 525 GTTACATCGAAACATATAAATATTGACTAATCTGGCTAACATTGAAATTGGTAAAATGAA 466
Query 2825 ATGGTTGAATAATTGAAAAATGAGATTATTCAGGAATACACATTGAATGCGAAGATTACG 2884
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 465 ATGGTTGAATAATTGAAAAATGAGATTATTCAGGAATACACATTGAATGCAAAGATTACG 406
Query 2885 CATTTCATTTCTGGTAGTAGATCCATAATCAAAAAAGTGTTTGTGATTGTTCCAGAAGAA 2944
||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct 405 CATTTCATTTCTGGTAGTAGATCTATAATCAAAAAAGTGTTTGTGATTGTTTCAAAAGAA 346
Query 2945 ATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAA 3004
|||||| |||||||||||||||||||| | |||||||||||||||| |||||||| ||||
Sbjct 345 ATGAAATAAAAGATACGGTAGAGCTAGAAGAGTTATTGTATGAGGTTTACCCAATACTAA 286
Query 3005 ATGCAGAGGCGCATAATAGATCGATATGAACATCATGAGCTGTCCCGCAATAAAACCTGT 3064
| ||||| ||||||||||||| |||||||||||||| ||||||||||||||||||| |||
Sbjct 285 AAGCAGAAGCGCATAATAGATTGATATGAACATCATAAGCTGTCCCGCAATAAAACATGT 226
Query 3065 TGTTGCTGATACTTTCTTCTCGGTTCCTTCTTCTCCTTCGTCCATAACCCGAGCTCGGAG 3124
|||||| |||||||||||| ||| || || || |||||||||| || | |||||||
Sbjct 225 TGTTGC-GATACTTTCTTCCCGG-TCTTTGTTTTCCTTCGTCC--AA----A-CTCGGAG 175
Query 3125 AAGGAAGAGATAAGAGGGCCCTATGGAGAATGTGGTCAGAAATCCATAATAGAGTCCGAC 3184
||| |||||||||||||| ||||| || ||| ||||||||||| ||||||| ||||||||
Sbjct 174 AAGAAAGAGATAAGAGGGTCCTATAGAAAATATGGTCAGAAATTCATAATAAAGTCCGAC 115
Query 3185 CACAACGACCGAATTGATTATCTTCATGCATAAGGATACTAGATTACCTAGTATAAAAGA 3244
||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 114 CACAATGACCGAATTTATTATCTTCATGTATAAGGATACTAGATTACCTAGTATAAAAGA 55
Query 3245 TTGAAAAACCATCACAAACCTCCCTTTTTTCTTTTCTATTTCAATTTCTGGATT 3298
||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 54 TTGAAAAACCATCACAAACCTCCCTTTTTTCTTTTCTATTTCAATTTTTGGATT 1
> ATCG00920.1 | Symbols: RRN16S.1 | chloroplast-encoded 16S ribosomal
RNA | chrC:101012-102502 FORWARD LENGTH=1491
Length=1491
Score = 209 bits (113), Expect = 4e-52
Identities = 113/113 (100%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 10152 AAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGT 10211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 AAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGT 1432
Query 10212 CACTAGCCCTGCCTTCGGCACCCCCCTCCTTGCGGTTAAGGTAACGACTTCGG 10264
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 CACTAGCCCTGCCTTCGGCACCCCCCTCCTTGCGGTTAAGGTAACGACTTCGG 1379
> ATCG01210.1 | Symbols: RRN16S.2 | chloroplast-encoded 16S ribosomal
RNA | chrC:136147-137637 REVERSE LENGTH=1491
Length=1491
Score = 209 bits (113), Expect = 4e-52
Identities = 113/113 (100%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 10152 AAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGT 10211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 AAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGT 1432
Query 10212 CACTAGCCCTGCCTTCGGCACCCCCCTCCTTGCGGTTAAGGTAACGACTTCGG 10264
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 CACTAGCCCTGCCTTCGGCACCCCCCTCCTTGCGGTTAAGGTAACGACTTCGG 1379
> AT2G07706.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:ATMG00470.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:3381901-3386102 REVERSE LENGTH=2080
Length=2080
Score = 139 bits (75), Expect = 5e-31
Identities = 84/88 (95%), Gaps = 1/88 (1%)
Strand=Plus/Minus
Query 6877 CTCC-TGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTT 6935
|||| |||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||
Sbjct 307 CTCCTTGGCTGTCTCTGCACCCCTACCTCCTTTATAACTGAGCGGCCATTTGGGGGCCTT 248
Query 6936 AGCTGGTGATCCGGGCTGTTTCCCTCTC 6963
||||||||||||||||||||||||||||
Sbjct 247 AGCTGGTGATCCGGGCTGTTTCCCTCTC 220
> AT1G64730.1 | Symbols: | pseudogene, putative NADH dehydrogenase
subunit F, blastp match of 68% identity and 5.3e-08 P-value
to GP|3366920|gb|AAC68594.1||AF064655 NADH dehydrogenase
subunit F {Stanleya pinnata} | chr1:24048864-24049160 FORWARD
LENGTH=297
Length=297
Score = 139 bits (75), Expect = 5e-31
Identities = 88/94 (94%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 1984 AATAAATTTTGTATATAATTGGTCATATAATCGTGGTTACATAGATGCtttttttAAAA- 2042
|||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 147 AATAGATTTTGTATATAATTGGTCATATAATCGTGGTTACATAGATTCTTTTTCTAAAAA 206
Query 2043 CATCTTTAATTGAAAGTATAAGAAGATTAGCAAA 2076
| ||||||||||||||||||| ||||||||||||
Sbjct 207 C-TCTTTAATTGAAAGTATAAAAAGATTAGCAAA 239
> AT3G32895.1 | Symbols: | transposable element gene | chr3:13431016-13435542
FORWARD LENGTH=4527
Length=4527
Score = 104 bits (56), Expect = 2e-20
Identities = 56/56 (100%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 2923 GTTTGTGATTGTTCCAGAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTT 2978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3207 GTTTGTGATTGTTCCAGAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTT 3152
> AT1G21945.1 | Symbols: | transposable element gene | chr1:7717826-7722120
FORWARD LENGTH=4295
Length=4295
Score = 102 bits (55), Expect = 6e-20
Identities = 55/55 (100%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1068 CTCATGCTTATTCGAAAGCTTTGTTGTTTTTAGGATCTGGATCCATTATTCATTC 1122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 CTCATGCTTATTCGAAAGCTTTGTTGTTTTTAGGATCTGGATCCATTATTCATTC 1889
> AT3G07230.1 | Symbols: | wound-responsive protein-related |
chr3:2299774-2300267 FORWARD LENGTH=371
Length=371
Score = 73.1 bits (39), Expect = 5e-11
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 2383 CTTCCATTTCATCGATTTTGTCCAGATCTTCCCCTTCTTCCG 2424
||||| ||||||||||||||||||||||||||||||||||||
Sbjct 73 CTTCCGTTTCATCGATTTTGTCCAGATCTTCCCCTTCTTCCG 114
> ATCG00940.1 | Symbols: TRNA.1 | tRNA-Ala | chrC:103665-104538
FORWARD LENGTH=73
Length=73
Score = 71.3 bits (38), Expect = 2e-10
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 8951 TTGCAAGAGCGGAGCTCTACCAACTGAGCTATATCCCC 8988
||||||||||||||||||||||||||||||||||||||
Sbjct 38 TTGCAAGAGCGGAGCTCTACCAACTGAGCTATATCCCC 1
Score = 65.8 bits (35), Expect = 8e-09
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Minus
Query 8115 TGGAGATAAGCGGACTCGAACCGCTGACATCCGCC 8149
|||||||||||||||||||||||||||||||||||
Sbjct 73 TGGAGATAAGCGGACTCGAACCGCTGACATCCGCC 39
> ATCG01190.1 | Symbols: TRNA.2 | tRNA-Ala | chrC:134111-134984
REVERSE LENGTH=73
Length=73
Score = 71.3 bits (38), Expect = 2e-10
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 8951 TTGCAAGAGCGGAGCTCTACCAACTGAGCTATATCCCC 8988
||||||||||||||||||||||||||||||||||||||
Sbjct 38 TTGCAAGAGCGGAGCTCTACCAACTGAGCTATATCCCC 1
Score = 65.8 bits (35), Expect = 8e-09
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Minus
Query 8115 TGGAGATAAGCGGACTCGAACCGCTGACATCCGCC 8149
|||||||||||||||||||||||||||||||||||
Sbjct 73 TGGAGATAAGCGGACTCGAACCGCTGACATCCGCC 39
> ATCG00930.1 | Symbols: TRNI.2 | tRNA-Ile | chrC:102801-103601
FORWARD LENGTH=72
Length=72
Score = 69.4 bits (37), Expect = 7e-10
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Minus
Query 9817 TTATCAGGGGCGCGCTCTACCACTGAGCTAATAGCCC 9853
|||||||||||||||||||||||||||||||||||||
Sbjct 37 TTATCAGGGGCGCGCTCTACCACTGAGCTAATAGCCC 1
Score = 65.8 bits (35), Expect = 8e-09
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Minus
Query 9053 TGGGCCATCCTGGATTTGAACCAGAGACCTCGCCC 9087
|||||||||||||||||||||||||||||||||||
Sbjct 72 TGGGCCATCCTGGATTTGAACCAGAGACCTCGCCC 38
> ATCG01200.1 | Symbols: TRNI.3 | tRNA-Ile | chrC:135048-135848
REVERSE LENGTH=72
Length=72
Score = 69.4 bits (37), Expect = 7e-10
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Minus
Query 9817 TTATCAGGGGCGCGCTCTACCACTGAGCTAATAGCCC 9853
|||||||||||||||||||||||||||||||||||||
Sbjct 37 TTATCAGGGGCGCGCTCTACCACTGAGCTAATAGCCC 1
Score = 65.8 bits (35), Expect = 8e-09
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Minus
Query 9053 TGGGCCATCCTGGATTTGAACCAGAGACCTCGCCC 9087
|||||||||||||||||||||||||||||||||||
Sbjct 72 TGGGCCATCCTGGATTTGAACCAGAGACCTCGCCC 38
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 524845946929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5