BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952677

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG01020.1 | Symbols: RPL32 | ribosomal protein L32 | chrC:113...   289    1e-77


> ATCG01020.1 | Symbols: RPL32 | ribosomal protein L32 | chrC:113449-113607 
FORWARD LENGTH=159
Length=159

 Score =  289 bits (156),  Expect = 1e-77
 Identities = 158/159 (99%), Gaps = 0/159 (0%)
 Strand=Plus/Plus

Query  73   ATGGCAGTTCCaaaaaaaCGTACTTCTATCTCGAAAAAGCGTATTCGTaaaaaaaTTTGG  132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCAGTTCCAAAAAAACGTACTTCTATCTCGAAAAAGCGTATTCGTAAAAAAATTTGG  60

Query  133  AAAAGGAAGGGATATTGGACATCGTTGAAAGCTTTTTCGTTAGGGAAATCACTTTCTACA  192
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  61   AAAAGGAAGGGATATTGGACATCGTTGAAAGCTTTTTCATTAGGGAAATCACTTTCTACA  120

Query  193  GGTAATTCAAAAAGtttttttGTACAGCAAAATAAATAA  231
            |||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGTAATTCAAAAAGTTTTTTTGTACAGCAAAATAAATAA  159



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12717740497


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5