BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952680

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG01070.1 | Symbols: NDHE | NADH-ubiquinone/plastoquinone oxi...   555    2e-157


> ATCG01070.1 | Symbols: NDHE | NADH-ubiquinone/plastoquinone oxidoreductase 
chain 4L | chrC:117804-118109 REVERSE LENGTH=306
Length=306

 Score =  555 bits (300),  Expect = 2e-157
 Identities = 304/306 (99%), Gaps = 0/306 (0%)
 Strand=Plus/Plus

Query  131  ATGATACTCGAACATGTACTTGTTTTGAGTGCCTATTTATTTTTGATTGGTCTTTATGGA  190
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGATACTCGAACATGTACTTGTTTTGAGTGCCTATTTATTTTTGATTGGTCTTTATGGA  60

Query  191  TTGATCACGAGTCGAAATATGGTTAGGGCTCTTATGTGTCTTGAACTTATACTCAATGCA  250
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTGATCACAAGTCGAAATATGGTTAGGGCTCTTATGTGTCTTGAACTTATACTCAATGCA  120

Query  251  GTTAATATGAATTTCGTAACATTTTCTGAtttttttGATAATTCCCAACTAAAAGGGGAA  310
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTTAATATGAATTTCGTAACATTTTCTGATTTTTTTGATAATTCCCAACTAAAAGGGGAA  180

Query  311  ATTTTCTGCATTTTTGTTATAGCAATTGCAGCCGCTGAAGCAGCTATTGGATTAGCTATA  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATTTTCTGCATTTTTGTTATAGCAATTGCAGCCGCTGAAGCAGCTATTGGATTAGCTATA  240

Query  371  GTCTCGTCAATTTATCGTAACAGAAAATCAACTCGCATAAACCAATCGACCTTATTAAAT  430
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  241  GTCTCGTCAATTTATCGTAACAGAAAATCAATTCGCATAAACCAATCGACCTTATTAAAT  300

Query  431  AAGTAA  436
            ||||||
Sbjct  301  AAGTAA  306



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29788849171


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5