BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952681 Length=641 Score E Sequences producing significant alignments: (Bits) Value ATCG01080.1 | Symbols: NDHG | NADH:ubiquinone/plastoquinone oxi... 965 0.0 > ATCG01080.1 | Symbols: NDHG | NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 | chrC:118377-118907 REVERSE LENGTH=531 Length=531 Score = 965 bits (522), Expect = 0.0 Identities = 528/531 (99%), Gaps = 0/531 (0%) Strand=Plus/Plus Query 21 ATGGATTTGCCTGGACCAATACATGATTTTCTTTTAGTTTTTCTGGGATCCGGTCTTCTA 80 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATTTGCCTGGACCAATACATGATTTTCTTTTAGTTTTTCTGGGATCCGGTCTTCTA 60 Query 81 GTAGGAGGTCTGGGAGTGGTATTCCTTCCCAACCCAATATTTTCAGCCTTTTCCTTAGGA 140 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 61 GTAGGGGGTCTGGGAGTGGTATTACTTCCCAACCCAATATTTTCAGCCTTTTCCTTAGGA 120 Query 141 TTTGTTCTTGTTTGTATATCTTTATTGTATATTCTATCAAATTCCCATTTTGTAGCTGCT 200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTTGTTCTTGTTTGTATATCTTTATTGTATATTCTATCAAATTCCCATTTTGTAGCTGCT 180 Query 201 GCACAACTCCTTATTTATGTGGGGGCCATAAATGTTTTAATCATATTTGCTGTGATGTTC 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GCACAACTCCTTATTTATGTGGGGGCCATAAATGTTTTAATCATATTTGCTGTGATGTTC 240 Query 261 ATGAATGATTCAGAATATTCCACAGATTTCAATCTGTGGACCGTTGGGAATGGGATTACT 320 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 241 ATGAATGATTCAGAATATTCCACAGATTTCAATCTGTGGACCATTGGGAATGGGATTACT 300 Query 321 TCGTTGGTTTGTACAACTATTCtttttttATTAATGTCTACTATTCTCGATACGTCATGG 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCGTTGGTTTGTACAACTATTCTTTTTTTATTAATGTCTACTATTCTCGATACGTCATGG 360 Query 381 TACGGGGTTATTTGGACTACAAAATTAAACCAGATTCTAGAGCAAGATTTAATAAGTAAT 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TACGGGGTTATTTGGACTACAAAATTAAACCAGATTCTAGAGCAAGATTTAATAAGTAAT 420 Query 441 AGTCAACAAATAGGAATTCATTTATCAACAGAtttttttCTGCCATTTGAACTCATTTCA 500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AGTCAACAAATAGGAATTCATTTATCAACAGATTTTTTTCTGCCATTTGAACTCATTTCA 480 Query 501 ATAATTCTTTTAGTTGCTTTGATAGGTGCAATTTCTGTGGCTCGTCAATAA 551 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ATAATTCTTTTAGTTGCTTTGATAGGTGCAATTTCTGTGGCTCGTCAATAA 531 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30944234552 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5