BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952681

Length=641
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG01080.1 | Symbols: NDHG | NADH:ubiquinone/plastoquinone oxi...   965    0.0  


> ATCG01080.1 | Symbols: NDHG | NADH:ubiquinone/plastoquinone oxidoreductase, 
chain 6 | chrC:118377-118907 REVERSE LENGTH=531
Length=531

 Score =  965 bits (522),  Expect = 0.0
 Identities = 528/531 (99%), Gaps = 0/531 (0%)
 Strand=Plus/Plus

Query  21   ATGGATTTGCCTGGACCAATACATGATTTTCTTTTAGTTTTTCTGGGATCCGGTCTTCTA  80
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGATTTGCCTGGACCAATACATGATTTTCTTTTAGTTTTTCTGGGATCCGGTCTTCTA  60

Query  81   GTAGGAGGTCTGGGAGTGGTATTCCTTCCCAACCCAATATTTTCAGCCTTTTCCTTAGGA  140
            ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   GTAGGGGGTCTGGGAGTGGTATTACTTCCCAACCCAATATTTTCAGCCTTTTCCTTAGGA  120

Query  141  TTTGTTCTTGTTTGTATATCTTTATTGTATATTCTATCAAATTCCCATTTTGTAGCTGCT  200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TTTGTTCTTGTTTGTATATCTTTATTGTATATTCTATCAAATTCCCATTTTGTAGCTGCT  180

Query  201  GCACAACTCCTTATTTATGTGGGGGCCATAAATGTTTTAATCATATTTGCTGTGATGTTC  260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GCACAACTCCTTATTTATGTGGGGGCCATAAATGTTTTAATCATATTTGCTGTGATGTTC  240

Query  261  ATGAATGATTCAGAATATTCCACAGATTTCAATCTGTGGACCGTTGGGAATGGGATTACT  320
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  241  ATGAATGATTCAGAATATTCCACAGATTTCAATCTGTGGACCATTGGGAATGGGATTACT  300

Query  321  TCGTTGGTTTGTACAACTATTCtttttttATTAATGTCTACTATTCTCGATACGTCATGG  380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TCGTTGGTTTGTACAACTATTCTTTTTTTATTAATGTCTACTATTCTCGATACGTCATGG  360

Query  381  TACGGGGTTATTTGGACTACAAAATTAAACCAGATTCTAGAGCAAGATTTAATAAGTAAT  440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  TACGGGGTTATTTGGACTACAAAATTAAACCAGATTCTAGAGCAAGATTTAATAAGTAAT  420

Query  441  AGTCAACAAATAGGAATTCATTTATCAACAGAtttttttCTGCCATTTGAACTCATTTCA  500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  AGTCAACAAATAGGAATTCATTTATCAACAGATTTTTTTCTGCCATTTGAACTCATTTCA  480

Query  501  ATAATTCTTTTAGTTGCTTTGATAGGTGCAATTTCTGTGGCTCGTCAATAA  551
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  ATAATTCTTTTAGTTGCTTTGATAGGTGCAATTTCTGTGGCTCGTCAATAA  531



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30944234552


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5