BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952685
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00900.1 | Symbols: RPS7.1, RPS7 | Ribosomal protein S7p/S5e... 865 0.0
ATCG01240.1 | Symbols: RPS7.2 | ribosomal protein S7 | chrC:140... 865 0.0
ATCG00905.1 | Symbols: RPS12C, RPS12 | ribosomal protein S12C |... 418 8e-116
ATCG01230.1 | Symbols: RPS12B, RPS12 | ribosomal protein S12B |... 418 8e-116
> ATCG00900.1 | Symbols: RPS7.1, RPS7 | Ribosomal protein S7p/S5e
family protein | chrC:97478-97945 REVERSE LENGTH=468
Length=468
Score = 865 bits (468), Expect = 0.0
Identities = 468/468 (100%), Gaps = 0/468 (0%)
Strand=Plus/Plus
Query 964 ATGTCACGCCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAAT 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCACGCCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAAT 60
Query 1024 CGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGaaaaaaaTCATTGGCTTAT 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTAT 120
Query 1084 CAAATTATCTATCGAGCCTTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCT 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAAATTATCTATCGAGCCTTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCT 180
Query 1144 GTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTA 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTA 240
Query 1204 GGCGGGTCAACTCATCAAGTTCCCATTGAAATAGGATCCACGCAAGGAAAAGCACTTGCC 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGCGGGTCAACTCATCAAGTTCCCATTGAAATAGGATCCACGCAAGGAAAAGCACTTGCC 300
Query 1264 ATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTA 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTA 360
Query 1324 AGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAG 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAG 420
Query 1384 ACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 1431
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 468
> ATCG01240.1 | Symbols: RPS7.2 | ribosomal protein S7 | chrC:140704-141171
FORWARD LENGTH=468
Length=468
Score = 865 bits (468), Expect = 0.0
Identities = 468/468 (100%), Gaps = 0/468 (0%)
Strand=Plus/Plus
Query 964 ATGTCACGCCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAAT 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCACGCCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAAT 60
Query 1024 CGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGaaaaaaaTCATTGGCTTAT 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTAT 120
Query 1084 CAAATTATCTATCGAGCCTTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCT 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAAATTATCTATCGAGCCTTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCT 180
Query 1144 GTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTA 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTA 240
Query 1204 GGCGGGTCAACTCATCAAGTTCCCATTGAAATAGGATCCACGCAAGGAAAAGCACTTGCC 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGCGGGTCAACTCATCAAGTTCCCATTGAAATAGGATCCACGCAAGGAAAAGCACTTGCC 300
Query 1264 ATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTA 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTA 360
Query 1324 AGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAG 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAG 420
Query 1384 ACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 1431
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 468
> ATCG00905.1 | Symbols: RPS12C, RPS12 | ribosomal protein S12C
| chrC:97999-98793 REVERSE LENGTH=258
Length=258
Score = 418 bits (226), Expect = 8e-116
Identities = 231/233 (99%), Gaps = 1/233 (0%)
Strand=Plus/Plus
Query 115 ACTATCACCCCCaaaaaaaCCAAACTCTGCTTTACGTAAAGTTGCCAGAGTACGATTAAC 174
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27 ACTATCACCCCC-AAAAAACCAAACTCTGCTTTACGTAAAGTTGCCAGAGTACGATTAAC 85
Query 175 CTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAATAACATTC 234
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 86 CTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTC 145
Query 235 TGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGT 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 TGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGT 205
Query 295 TCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTA 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 TCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTA 258
> ATCG01230.1 | Symbols: RPS12B, RPS12 | ribosomal protein S12B
| chrC:139856-140650 FORWARD LENGTH=258
Length=258
Score = 418 bits (226), Expect = 8e-116
Identities = 231/233 (99%), Gaps = 1/233 (0%)
Strand=Plus/Plus
Query 115 ACTATCACCCCCaaaaaaaCCAAACTCTGCTTTACGTAAAGTTGCCAGAGTACGATTAAC 174
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTATCACCCCC-AAAAAACCAAACTCTGCTTTACGTAAAGTTGCCAGAGTACGATTAAC 59
Query 175 CTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAATAACATTC 234
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 60 CTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTC 119
Query 235 TGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGT 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGT 179
Query 295 TCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTA 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTA 232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77007636030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5