BLASTN 2.2.29+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20101214_updated
41,671 sequences; 64,867,051 total letters
Query= CBF2_halleri
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25470.1 | Symbols: CBF2, DREB1C, FTQ4, ATCBF2 | C-repeat/DR... 804 0.0
AT4G25490.1 | Symbols: CBF1, DREB1B, ATCBF1 | C-repeat/DRE bind... 717 0.0
AT4G25480.1 | Symbols: DREB1A, CBF3, ATCBF3 | dehydration respo... 632 1e-180
> AT4G25470.1 | Symbols: CBF2, DREB1C, FTQ4, ATCBF2 | C-repeat/DRE
binding factor 2 | chr4:13015277-13016220 REVERSE LENGTH=944
Length=944
Score = 804 bits (435), Expect = 0.0
Identities = 579/647 (89%), Gaps = 16/647 (2%)
Strand=Plus/Plus
Query 10 TCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGACTACGAG---------TCCTCAGGC 60
||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 141 TCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGATTACGAGTCTCCGGTTTCCTCAGGC 200
Query 61 GGCGATTATATTCCGA-CATTGGCGACAAGCTGTCCCAAGAAACCTGCCGGAAGGAAGAA 119
|| ||||| | ||||| || || || ||||| ||||||||||| || |||||||||||
Sbjct 201 GGTGATTACAGTCCGAAGCTT-GCCACGAGCTGCCCCAAGAAACCAGCGGGAAGGAAGAA 259
Query 120 GTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCTAAGAAACTCCGGTAAGTG 179
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 260 GTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGGTAAGTG 319
Query 180 GGTGTGTGAGTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTGGGGACTTTCCAAAC 239
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 320 GGTGTGTGAGTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTCGGGACTTTCCAAAC 379
Query 240 CGCTGAGATGGCCGCTCGTGCTCACGACGTCGCCGCCATAGCTCTCCGTGGCAGATCAGC 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 380 CGCTGAGATGGCAGCTCGTGCTCACGACGTCGCCGCCATAGCTCTCCGTGGCAGATCTGC 439
Query 300 CTGTCTCAATTTCGCTGACTCGGCTTGGAGGCTACGAATCCCCGAGTCAACGTGCGCCAA 359
|||||||||||||||||||||||||||| ||||||||||||| || ||||| || |||||
Sbjct 440 CTGTCTCAATTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAATCAACCTGTGCCAA 499
Query 360 GGAAATCCAAAAGGCAGCGGCTGAAGCCGCGATGGCTTTTCAATATGAGATGTGTGATAC 419
||||||||||||||| ||||||||||||||| || ||||||| ||||||||||| |||
Sbjct 500 GGAAATCCAAAAGGCGGCGGCTGAAGCCGCGTTGAATTTTCAAGATGAGATGTGTCATAT 559
Query 420 GACGACGACGGATCATGGCCTTGACATGGAAGAGACGATGGTGGAAGCTATTGTA-ACGC 478
||||||| | |||||| ||||||||||| ||||| ||||||| |||||| || ||||
Sbjct 560 GACGACGGATGCTCATGGTCTTGACATGGAGGAGACCTTGGTGGAGGCTATT-TATACGC 618
Query 479 CGGAACAGAGC---GACGCTTTTTATTTAGACGACGAGGCGATATTCGGGATGTCTAGTT 535
||||||||||| || || |||||| | || || |||||||| || |||||||||||||
Sbjct 619 CGGAACAGAGCCAAGATGCGTTTTATATGGATGAAGAGGCGATGTTGGGGATGTCTAGTT 678
Query 536 TGTTGGATAATATGGCCGAAGGAATGCTCTTGCCGCCGCCGTCCGTTCAATGGAACTATA 595
|||||||||| ||||||||||| ||||| || ||| ||||||| ||||||||||||||||
Sbjct 679 TGTTGGATAACATGGCCGAAGGGATGCTTTTACCGTCGCCGTCGGTTCAATGGAACTATA 738
Query 596 ATTTTGATGTCGAGGGAGATGATGACGTGTCGTTATGGAGTTATTAA 642
||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 739 ATTTTGATGTCGAGGGAGATGATGACGTGTCCTTATGGAGCTATTAA 785
> AT4G25490.1 | Symbols: CBF1, DREB1B, ATCBF1 | C-repeat/DRE binding
factor 1 | chr4:13021780-13022725 REVERSE LENGTH=946
Length=946
Score = 717 bits (388), Expect = 0.0
Identities = 556/638 (87%), Gaps = 7/638 (1%)
Strand=Plus/Plus
Query 10 TCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGACTACGAGTCCTC-AGGCGGCGATTA 68
|||||||| || ||||||||||||||||||||||| |||||| |||| |||||| |||||
Sbjct 170 TCATTTTCAGCTTTTTCTGAAATGTTTGGCTCCGATTACGAG-CCTCAAGGCGGAGATTA 228
Query 69 TATTCCGACATTGGCGACAAGCTGTCCCAAGAAACCTGCCGGAAGGAAGAAGTTTCGTGA 128
| |||||| ||||| || || ||||| |||||||| || || | ||||||||||||||
Sbjct 229 TTGTCCGACGTTGGCCACGAGTTGTCCGAAGAAACCGGCGGGCCGTAAGAAGTTTCGTGA 288
Query 129 GACTCGTCACCCAATTTACAGAGGAGTTCGTCTAAGAAACTCCGGTAAGTGGGTGTGTGA 188
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||
Sbjct 289 GACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGGTAAGTGGGTTTCTGA 348
Query 189 GTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTGGGGACTTTCCAAACCGCTGAGAT 248
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 349 AGTGAGAGAGCCAAACAAGAAAACCAGGATTTGGCTCGGGACTTTCCAAACCGCTGAGAT 408
Query 249 GGCCGCTCGTGCTCACGACGTCGCCGCCATAGCTCTCCGTGGCAGATCAGCCTGTCTCAA 308
||| |||||||||||||||||||| || |||| ||||||||| ||||||| ||||||||
Sbjct 409 GGCAGCTCGTGCTCACGACGTCGCTGCATTAGCCCTCCGTGGCCGATCAGCATGTCTCAA 468
Query 309 TTTCGCTGACTCGGCTTGGAGGCTACGAATCCCCGAGTCAACGTGCGCCAAGGAAATCCA 368
|||||||||||||||||| ||||||||||||| |||||||| ||||||||||| |||||
Sbjct 469 CTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAGTCAACATGCGCCAAGGATATCCA 528
Query 369 AAAGGCAGCGGCTGAAGCCGCGATGGCTTTTCAATATGAGATGTGTGATACGACGACGAC 428
||| || || |||||||| ||| ||||||||||| |||||| ||||||||||||||| ||
Sbjct 529 AAAAGCGGCTGCTGAAGCGGCGTTGGCTTTTCAAGATGAGACGTGTGATACGACGACCAC 588
Query 429 GGATCATGGCCTTGACATGGAAGAGACGATGGTGGAAGCTATTGTA-ACGCCGGAACAGA 487
| |||||||||| |||||||| ||||||||||||||||||||| || || ||||||||||
Sbjct 589 GAATCATGGCCTGGACATGGAGGAGACGATGGTGGAAGCTATT-TATACACCGGAACAGA 647
Query 488 GCGACGCT---TTTTATTTAGACGACGAGGCGATATTCGGGATGTCTAGTTTGTTGGATA 544
|||| | | |||||| | || || ||| | || || |||||| | | |||||||||||
Sbjct 648 GCGAAGGTGCGTTTTATATGGATGAGGAGACAATGTTTGGGATGCCGACTTTGTTGGATA 707
Query 545 ATATGGCCGAAGGAATGCTCTTGCCGCCGCCGTCCGTTCAATGGAACTATAATTTTGATG 604
||||||| ||||| ||||| || ||||||||||| ||||||||||| |||||| ||| |
Sbjct 708 ATATGGCTGAAGGCATGCTTTTACCGCCGCCGTCTGTTCAATGGAATCATAATTATGACG 767
Query 605 TCGAGGGAGATGATGACGTGTCGTTATGGAGTTATTAA 642
||| ||||||| |||||||||| | |||||||| |||
Sbjct 768 GCGAAGGAGATGGTGACGTGTCGCTTTGGAGTTACTAA 805
> AT4G25480.1 | Symbols: DREB1A, CBF3, ATCBF3 | dehydration response
element B1A | chr4:13018214-13019121 REVERSE LENGTH=908
Length=908
Score = 632 bits (342), Expect = 1e-180
Identities = 550/649 (85%), Gaps = 20/649 (3%)
Strand=Plus/Plus
Query 10 TCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGACTACGAG---------TCCTCAGGC 60
||||||||||| ||||||||||||||||||||||| |||||| |||||||||
Sbjct 125 TCATTTTCTGCTTTTTCTGAAATGTTTGGCTCCGATTACGAGTCTTCGGTTTCCTCAGGC 184
Query 61 GGCGATTATATTCCGACATTGGCGACAAGCTGTCCCAAGAAACCTGCCGGAAGGAAGAAG 120
|| |||||||||||||| | |||| ||||| ||||||||||| || || | ||||||
Sbjct 185 GGTGATTATATTCCGACGCTTGCGAGCAGCTGCCCCAAGAAACCGGCGGGTCGTAAGAAG 244
Query 121 TTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCTAAGAAACTCCGGTAAGTGG 180
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 245 TTTCGTGAGACTCGTCACCCAATATACAGAGGAGTTCGTCGGAGAAACTCCGGTAAGTGG 304
Query 181 GTGTGTGAGTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTGGGGACTTTCCAAACC 240
|| |||||| | ||||| |||||||||||||| ||||||||||| || || || ||||||
Sbjct 305 GTTTGTGAGGTTAGAGAACCAAACAAGAAAACAAGGATTTGGCTCGGAACATTTCAAACC 364
Query 241 GCTGAGATGGCCGCTCGTGCTCACGACGTCGCCGCCATAGCTCTCCGTGGCAGATCAGCC 300
||||||||||| ||||| ||||||||||| ||||| |||| || |||||| ||||||||
Sbjct 365 GCTGAGATGGCAGCTCGAGCTCACGACGTTGCCGCTTTAGCCCTTCGTGGCCGATCAGCC 424
Query 301 TGTCTCAATTTCGCTGACTCGGCTTGGAGGCTACGAATCCCCGAGTCAACGTGCGCCAAG 360
||||||||||||||||||||||||||||| || |||||||| || ||||| ||||| |||
Sbjct 425 TGTCTCAATTTCGCTGACTCGGCTTGGAGACTCCGAATCCCGGAATCAACTTGCGCTAAG 484
Query 361 GAAATCCAAAAGGCAGCGGCTGAAGCCGCGATGGCTTTTCAATATGAGATGTGTGATACG 420
|| ||||||||||| ||||||||||| ||| |||| ||||| |||||||||||||| |
Sbjct 485 GACATCCAAAAGGCGGCGGCTGAAGCTGCGTTGGCGTTTCAGGATGAGATGTGTGAT--G 542
Query 421 ACGACGACGGATCATGGCCTTGACATGGAAGAGACGATGGTGGAAGCTATTGTA-ACGCC 479
||||||||||||||||| | |||||||| |||||| ||||||| |||||| || ||| |
Sbjct 543 -CGACGACGGATCATGGCTTCGACATGGAGGAGACGTTGGTGGAGGCTATT-TACACGGC 600
Query 480 GGAACAGAGCGAC---GCTTTTTATTTAGACGACGAGGCGATATTCGGGATGTCTAGTTT 536
|||||||||||| || |||||| | |||| |||||||| || | |||| | |||||
Sbjct 601 GGAACAGAGCGAAAATGCGTTTTATATGCACGATGAGGCGATGTTTGAGATGCCGAGTTT 660
Query 537 GTTGGATAATATGGCCGAAGGAATGCTCTTGCCGCCGCCGTCCGTTCAATGGAACTATAA 596
||||| ||||||||| ||||| ||||| ||||||| |||||||| || ||||| ||||
Sbjct 661 GTTGGCTAATATGGCAGAAGGGATGCTTTTGCCGCTTCCGTCCGTACAGTGGAATCATAA 720
Query 597 TTTTGATGTCGA-GG-GA-GATGATGACGTGTCGTTATGGAGTTATTAA 642
| ||| ||||| || || ||||| ||||| ||||||||||||||||||
Sbjct 721 TCATGAAGTCGACGGCGATGATGACGACGTATCGTTATGGAGTTATTAA 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39380195292
Database: TAIR10_cdna_20101214_updated
Posted date: Sep 24, 2014 7:52 PM
Number of letters in database: 64,867,051
Number of sequences in database: 41,671
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5