BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01010.1
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333554 jgi|Araly1|333554|fgenesh1_pg.C_scaffold_1000119 750 0.0
> Ahg333554 jgi|Araly1|333554|fgenesh1_pg.C_scaffold_1000119
Length=1398
Score = 750 bits (406), Expect = 0.0
Identities = 573/648 (88%), Gaps = 34/648 (5%)
Strand=Plus/Plus
Query 804 AGGATCATTCAACCCTCTCCTTGAGTATGATTTTGCAAATCACGGCGGTCAGTGGCTGAG 863
|||||| || ||||||||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct 753 AGGATCTTTTAACCCTCTCCTTGAGTATGATTTAGCAAATCACGGTGGTCAGTGGTTGAG 812
Query 864 TGACTATATCGACCTGCAACAGCAAGTTCCTTACTTGGCACCTTATGAAAATGAGTCGGA 923
|||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 813 TGACTATATCAACCTACAACAACAAGTTCCTTACTTGGCCCCTTATGAAAATGAGTCGGA 872
Query 924 GATGATTTGGAAG-CATGTGATTGAAGAAAATTTTGAGTTTTTGGTAGATGAAAGGACAT 982
||||||||||||| | |||| |||||||||||||||||| ||| | |||||||||||||
Sbjct 873 GATGATTTGGAAGTC-TGTGGTTGAAGAAAATTTTGAGTCTTTAATTGATGAAAGGACAT 931
Query 983 CTATGCAACAGCATTACAGTGATCACCGGCCCAAAAAACCTGTGTCTGGGGTTTTGCCTG 1042
|||||||| |||||||||||||| ||||||| |||||||||||| |||||||||||||||
Sbjct 932 CTATGCAAGAGCATTACAGTGATTACCGGCCAAAAAAACCTGTGACTGGGGTTTTGCCTG 991
Query 1043 ATGATAGCAGTGATACTGAAACTGGATCAATGATTTTCGAAGACACTTCGAGCTCCACTG 1102
||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||
Sbjct 992 ATGATAGCAGTGATACTGAAATTGGCTCAATGATTTTCGAAGACACTTCAAGCTCGACTG 1051
Query 1103 ATAGTGTTGGTAGTTCAGATGAACCGGGCCATACTCGTATAGATGATATTCCATCATTGA 1162
|||||||||||||||||||||||||| ||||||||| |||||||||||||| | ||||||
Sbjct 1052 ATAGTGTTGGTAGTTCAGATGAACCGTGCCATACTCCTATAGATGATATTCAACCATTGA 1111
Query 1163 ACATTATTGAGCCTTTGCACAATTATAAGGCACAAGAGCAACCAAAGCAGC--A----G- 1215
||| || | |||||| |||||||||| ||||||||||||||||||||||| | |
Sbjct 1112 ACACTAGTAAGCCTTCGCACAATTATGAGGCACAAGAGCAACCAAAGCAGTTGAAATTGC 1171
Query 1216 ---A---G--CAAAGAAAAGGTGATA-AGTTCGCAGAAAAGCGAATGCGAGTGGAAAATG 1266
| | |||||||||||||||| | ||| ||||||||||||| |||||||||||||
Sbjct 1172 CGTATCAGAACAAAGAAAAGGTGATATA-TTCTCAGAAAAGCGAATACGAGTGGAAAATG 1230
Query 1267 GCTGAAGACTCGATCAAGATACCTCCATCCACCAACACGGTGAAGCAGAGCTGGATTGTT 1326
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1231 GCTGAAGACTCGATCAAGAAACCTCTATCCAACAACACGGTGAAGCAGAGCTGGATTGTT 1290
Query 1327 TTGGAGAA------T----G-----CACAGTGGAACTATCTCAAGAACATGATCATTGGT 1371
|||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 1291 TTGGAGAAGAGGAGTCAAAGGAATGCACAGTGGAACTATCTCAAGAACATGATCATTGGT 1350
Query 1372 GTCTTGTTGTTCATCTCCGTCATTAGTTGGATCATTCTTGTTGGTTAA 1419
|||||||||||||||||| ||||| ||| ||||||||| |||||||||
Sbjct 1351 GTCTTGTTGTTCATCTCCATCATTGGTTCGATCATTCTGGTTGGTTAA 1398
Score = 630 bits (341), Expect = 8e-180
Identities = 550/647 (85%), Gaps = 30/647 (5%)
Strand=Plus/Plus
Query 130 ATGGAGGATCAAGTTGGG-TTTGGGTTCCGTCCGAAC-GACGAGGAGCTCGTTGGTCACT 187
||||||||| | |||| | ||| ||||||||| || || || |||||||| ||| |||
Sbjct 1 ATGGAGGAT-TTGGTGGGATATGGATTCCGTCCG-ACGGATGATGAGCTCGTAGGTTACT 58
Query 188 ATCTCCGTAACAAAA-TCGAAGGAAACACTAGCCGCGACGTTGAAGTAGCCATCAGCGAG 246
|||||| |||||||| || ||||| | | | || | || |||| |||||| | ||||
Sbjct 59 ATCTCCATAACAAAATTC-TGGGAAAGAATTG--GCTA-GTAGAAGGAGCCATTAACGAG 114
Query 247 GTCAACATCTGTAGCTACGATCCTTGGAACTTGCGCTTCCAGTCAAAG-TACAAATCGAG 305
|||||||||||||||| |||||| ||||||||||||||||| || ||| || ||||||||
Sbjct 115 GTCAACATCTGTAGCTTCGATCCATGGAACTTGCGCTTCCAATCTAAGATA-AAATCGAG 173
Query 306 AGATGCTATGTGGTACTTCTTCTCTCGTAGAGAAAAC-A--ACA--AA-GGGAATCGACA 359
|||| |||||||||| ||||||||||| ||||||||| | ||| || |||||||||||
Sbjct 174 AGATCCTATGTGGTATTTCTTCTCTCGAAGAGAAAACAAGTACACCAATGGGAATCGACA 233
Query 360 GAGCAGGACAACGGTTTCTGG-TAAATGGAAGCTTACCGGAGAATCTGTTGAGGTCAAGG 418
|||||||||||| | |||||| | |||||| |||| ||||| |||| || |||||||
Sbjct 234 GAGCAGGACAACAGATTCTGGCT-TCTGGAAGGTTACTGGAGAGCCTGTGGATGTCAAGG 292
Query 419 ACCAGTGGGG-ATTTTGTAGTGAGGGCTTTCGTGGTAAGATTGGTCATAAAAGGGTTTTG 477
| |||||||| | || || || | | || ||||||||||||||||||||||||||||
Sbjct 293 ATCAGTGGGGAACTTGGT-GT-A--CCACTCCTGGTAAGATTGGTCATAAAAGGGTTTTG 348
Query 478 GTGTTCCTCGATGGAAG-ATACCCTGACAAAACCAAATCTGATTGGGTTATCCACGAGTT 536
|| |||||| | ||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct 349 GTCTTCCTCAAGGGAAGAAT-CTCTGACAAAACCAAATCTGATTGGGTTATCCACGAGTT 407
Query 537 CCACTACGACCTCTTACCAGAACATCAGAGGACATATGTCATCTGCAGACTTGAGTACAA 596
||| |||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 408 TCACGACGACCTCTTACCAGAACATCAGAGGACCTATGTCATCTGCAGACTTGAATATAA 467
Query 597 GGGTGATGATGC-GGA-CATTCTATCTGCTTATGCAATAGATCCCACTCCCGCTTTTGTC 654
||| | || | || |||||||||||| | |||| ||||||||||||| ||||||||
Sbjct 468 GGGCAACGA--CAAGAGCATTCTATCTGCCAACGCAACAGATCCCACTCCCACTTTTGTC 525
Query 655 CCCAATATGACTAGTAGTGCAGGTTCTGTGGTCAACCAATCACGTCAACGAAATTCAGGA 714
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 526 CCTAATATGACTAGTAGTGCAGGTTCTGTGGTCAACCAATCACGTCAAGGAAATTCAGCA 585
Query 715 TCTTACAACACTTACTCTGAGTATGATTCAGCAAATCATGGCCAGCA 761
|||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 586 TCTTACAACACTTATTCTGAATATGATTCAGCAAATCATGGCCAGCA 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63305987190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5