BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G01020.1

Length=1623
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470181 jgi|Araly1|470181|fgenesh2_kg.1__135__AT1G01020.1         1184    0.0  
  Ahg333554 jgi|Araly1|333554|fgenesh1_pg.C_scaffold_1000119           152    7e-36


> Ahg470181 jgi|Araly1|470181|fgenesh2_kg.1__135__AT1G01020.1
Length=767

 Score = 1184 bits (641),  Expect = 0.0
 Identities = 725/767 (95%), Gaps = 0/767 (0%)
 Strand=Plus/Plus

Query  57   gagagagagagagCAATGGCGGCGAGTGAACACAGATGCGTGGGATGTGGTTTTAGGGTA  116
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1    GAGAGAGAAAGAGCAATGGCGGCGAGTGAACACAGATGCGTGGGATGTGGTTTTAGGGTT  60

Query  117  AAGTCATTGTTCATTCAATACTCTCCGGGTAACATTCGTCTCATGAAATGCGGAAATTGC  176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AAGTCATTGTTCATTCAATACTCTCCGGGTAACATTCGTCTCATGAAATGCGGAAATTGC  120

Query  177  AAGGAAGTAGCAGATGAGTACATCGAGTGTGAACGCATGATTATTTTCATCGATTTAATC  236
            |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AAGGAAGTAGCAGACGAATACATCGAGTGTGAACGCATGATTATTTTCATCGATTTAATC  180

Query  237  CTTCACAGACCAAAGGTATATAGACACGTCCTCTACAATGCAATTAATCCAGCAACTGTC  296
            ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct  181  CTTCATAGACCAAAGGTTTATAGACACGTCCTCTACAATGCAATTAATCCAGAAACTGTC  240

Query  297  AATATTCAGCATCTGTTGTGGAAGTTGGTCTTCGCCTATCTTCTTCTAGACTGTTATAGA  356
            |||| ||||||| |||||||||||||||||||||  |||||||||||||||| |||||||
Sbjct  241  AATACTCAGCATTTGTTGTGGAAGTTGGTCTTCGTGTATCTTCTTCTAGACTCTTATAGA  300

Query  357  AGCTTGCTACTGAGAAAAAGTGATGAAGAATCGAGCTTTTCTGATAGCCCTGTTCTTCTA  416
            |||||||||||||||| || |||||| ||||||||||||||| ||||| | |||||| ||
Sbjct  301  AGCTTGCTACTGAGAAGAACTGATGACGAATCGAGCTTTTCTCATAGCTCGGTTCTTATA  360

Query  417  TCTATAAAGGTTCTGATTGGTGTCTTATCTGCAAACGCTGCATTTATCATCTCTTTTGCC  476
            |||||||||||||| || |||||||||||||||||||||||||||||| ||||||| |||
Sbjct  361  TCTATAAAGGTTCTAATCGGTGTCTTATCTGCAAACGCTGCATTTATCTTCTCTTTCGCC  420

Query  477  ATTGCGACTAAGGGTTTGCTAAATGAAGTTTCCAGAAGAAGAGAGATTATGTTGGGGATA  536
            |||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  421  ATTGCGGCCAAGGGTTTGCTAAATGAAGTTTCCAGAGGAAGAGAGATTATGTTGGGGATA  480

Query  537  TTCATCTCTAGTTACTTCAAGATATTTCTGCTTGCGATGTTGGTATGGGAATTCCCAATG  596
            | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  481  TGCATCTCTAGTTACTTCAAGATATTTCTGTTTGCGATGTTGGTATGGGAATTCCCAATG  540

Query  597  TCAGTGAttttttttGTCGATATACTTCTCTTAACATCAAACTCCATGGCTCTTAAAGTG  656
            |||||||| ||  |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  541  TCAGTGATCTTCATTGTCGATATACTTGTCTTAACATCAAACTCCATGGCTCTTAAAGTG  600

Query  657  ATGACTGAATCAACAATGACCAGATGCATAGCCGTATGCTTAATCGCGCACTTGATTAGA  716
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct  601  ATGACTGAATCAACAATGACGAGATGCATAGCCGTATGCTTAATCGCGCACTTGGTTAGA  660

Query  717  TTCTTGGTGGGTCAGATTTTTGAGCCGACAATATTTTTGATACAAATTGGATCTCTGTTG  776
            ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||| ||
Sbjct  661  TTCTTGGTGGGTCAGATCTTTGAGCCGACAATATTTTTGATACAGTTTGGATCTCTGATG  720

Query  777  CAATATATGTCTTATTTTTTCAGAATCGTATGATCCCATCAGCTTCC  823
            |||||| |||||||||| ||||||| ||||||||||||||| |||||
Sbjct  721  CAATATCTGTCTTATTTATTCAGAACCGTATGATCCCATCATCTTCC  767


> Ahg333554 jgi|Araly1|333554|fgenesh1_pg.C_scaffold_1000119
Length=1398

 Score =  152 bits (82),  Expect = 7e-36
 Identities = 106/117 (91%), Gaps = 4/117 (3%)
 Strand=Plus/Minus

Query  1280  AACCAA--AGAATGATCCAGCCAATGATGGAGATGAACAATAAGA-AGCCAATGATCATG  1336
             ||||||  ||||||||| | |||||||||||||||||||| |||| | ||||||||||||
Sbjct  1396  AACCAACCAGAATGATCGAACCAATGATGGAGATGAACAACAAGACA-CCAATGATCATG  1338

Query  1337  TTCTTGAGATAGTTCCACTGTGAATTCCTTTGACTCATCTCCTCTAAAACAATCCAG  1393
             |||||||||||||||||||||| ||||||||||||| ||| ||| ||||||||||||
Sbjct  1337  TTCTTGAGATAGTTCCACTGTGCATTCCTTTGACTCCTCTTCTCCAAAACAATCCAG  1281



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 60830121265


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5