BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01030.1
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470180 jgi|Araly1|470180|fgenesh2_kg.1__134__AT1G01030.1 2514 0.0
Ahg943596 jgi|Araly1|943596|scaffold_604140.1 233 3e-60
Ahg486704 jgi|Araly1|486704|fgenesh2_kg.5__2696__AT3G61970.1 196 4e-49
> Ahg470180 jgi|Araly1|470180|fgenesh2_kg.1__134__AT1G01030.1
Length=1869
Score = 2514 bits (1361), Expect = 0.0
Identities = 1750/1925 (91%), Gaps = 78/1925 (4%)
Strand=Plus/Plus
Query 1 ATATCATTCATGGGCCCCTACGCATTACTCGGTACCAATCTCGctctctctctctAAGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATATCATTCATGGGCCCCTACGCATTACTCGGTACCAATCTCGCTCTCTCTCTCTAAGTC 60
Query 61 TTGAAACTCTATCAAGAATCTCAAGCCACCATTTTTTCTTCATCTTCATAAAGAGAAAGA 120
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TTGAAACACTATCAAGAATCTCAAGCCACCATTTTTTCTTCATCCTCATAAAGAGAAAGA 120
Query 121 GAGAGATCCTCTTGTTTGGCAAGAACCCAATTTGAGTTCTAAGTCCTGATTTGCT-TAGC 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 121 GAGAGATCCTCTTGTTTGGCAAGAACCCAATTTGAGTTCCAAGTCCTGATTTGCTCT-GA 179
Query 180 TCTTT-TCTTTCCTTGATTTCATTCTATATAAAGTCAACG-GAA-A-GA-TATACATATA 234
||||| ||||||||||||||||||| ||| |||||||| ||| | | |||| |||||
Sbjct 180 TCTTTCTCTTTCCTTGATTTCATTC--TAT--AGTCAACGAGAAGATAATTATATATATA 235
Query 235 TAGTTTTCTTCCGATTCTAGGGTTTTCATATTTCCTCTAAATTTTCATGGTCAAAGAAGA 294
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 236 TAGTTTTCTTCCGATTCTAGGGTTTTCATATTTCATCTAAATTTTCATGGTCAAAGAAGA 295
Query 295 AAATCTAAGAAACAATCGAACCAGCAAGAGAAAGAAGACTTCAATATCAACAtctctctc 354
|| || ||||| |||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 296 AATTCAAAGAACCAATCGAACCAGGAAGAGAAAGAAAACATCAATATCAACATCTCTCTC 355
Query 355 tccctctctc-tctctTAT-ATTATAAGATCTCGAGTTGAGTCATCATCATCGTCAATGG 412
| ||||||| | | |||| | | |||||||||||||||| |||||||||| |||||
Sbjct 356 T--CTCTCTCGTATATTATAAGTCGAAGATCTCGAGTTGAG---TCATCATCGTTAATGG 410
Query 413 CTTTGAAAAAC-ATCCGCAACAATTCACCAATTGAAGAACAAGAGAAAGGTTTAAACTTC 471
||||||||||| | | ||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 411 CTTTGAAAAACGA-CGGCAACAATTCACCAAGTCAAGAACAAGAGGAAGGTTTAAACTTT 469
Query 472 ATCAAGATTCACTAAGACCCA-CT-AAGAGCCAACTCA-AAACTAAA-CGGAGCAAGGTT 527
| ||||||||||| |||| || || |||| || | ||| ||| |||||||||||
Sbjct 470 AGCAAGATTCACTGAGACTCATCTCAAGA---AAAGGAGAAA-AAAAGAGGAGCAAGGTT 525
Query 528 TTGCCaa-aaaccaaaaaaaaaaaaaaaaaGATTCAAGAACCATCTCGTAAATCAAGATT 586
||| ||| ||| ||| ||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 526 TTGTCAAGAAA-CAACAAAAAAAAAAAAAAGATTCAAGAGCCATCGCATAAATCAAGATT 584
Query 587 TCTCCAAGGAAAATCAGATAAGTCATAATGGATCTATCCCTGGCTCCGACAACAACAACA 646
| |||||| |||||| |||| |||| |||||||||| ||| | | | | |||||
Sbjct 585 TAACCAAGGCAAATCATATAATTCATCATGGATCTAT-CCT---T-AG-C-TC--CAACA 635
Query 647 AGTTCCGACCAAGAACAAGACAGAGACCAAGAATTAACCTCCAACATCGGAGCAAGCAGC 706
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 636 AGCTCCGACCAAGAACAAGACAGAGACCAAGAATTAACCTCCAACATCCGAGCAAGCAGC 695
Query 707 AGCTCCGGTCCCAGCGGAAACAACAACAACCTTCCGATGATGATGATTCCACCTCCGGAG 766
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 696 AGCTCTGGCCCCAGCGGAAACAACAACAACCTTCCGATGATGATGATTCCACCACCGGAG 755
Query 767 AAAGAACACATGTTCGACAAAGTGGTAACACCAAGCGACGTCGGAAAACTCAACAGACTC 826
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 AAAGAACACATGTTCGACAAAGTGGTAACACCAAGCGACGTCGGAAAACTCAACAGACTT 815
Query 827 GTGATCCCTAAACAACACGCTGAGAGGTATTTCCCTCTAGACTCCTCAAACAACCAAAAC 886
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 816 GTGATCCCTAAACAACACGCTGAGAGGTATTTCCCACTAGACTCCTCAAACAACCAAAAC 875
Query 887 GGCACGCTTTTGAACTTCCAAGACAGAAACGGCAAGATGTGGAGATTCCGTTACTCGTAT 946
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 GGCACGCTGTTGAACTTCCAAGACAGAAACGGCAAGATGTGGAGATTCCGTTACTCGTAT 935
Query 947 TGGAACTCTAGCCAGAGCTACGTTATGACCAAAGGATGGAGCCGTTTCGTCAAAGAGAAA 1006
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 936 TGGAACTCTAGCCAGAGCTACGTGATGACCAAAGGATGGAGCCGTTTCGTCAAAGAGAAA 995
Query 1007 AAGCTCGATGCAGGAGACATTGTCTCTTTCCAACGAGGCATCGGAGATGAGTCAGAAAGA 1066
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 996 AAGCTCGACGCAGGAGACATTGTCTCTTTCCAACGAGGCATCGGAGATGAGTCCGAAAGA 1055
Query 1067 TCCAAACTTTACATAGATTGGAGGCATAGACCCGACATGAGCCTCGTTCAAGCACATCAG 1126
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1056 TCCAAACTTTACATAGATTGGAGGCATAGACCCGACATGAGCCTCGTTCAGGCACATCAG 1115
Query 1127 TTTGGTAATTTTGGTTTCAATTTCAATTTCCCGACCACTTCTCAATATTCCAACAGATTT 1186
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 TTTGGTAATTTCGGTTTCAATTTCAATTTCCCGACCACTTCTCAATATTCCAACAGATTT 1175
Query 1187 CATCCATTGCCAGAATATAACTCCGTCCCGATTCACCGGGGCTTAAACATCGGAAATCAC 1246
||||||||||| ||||| || |||||||||||||||||| |||| ||||||||||| |||
Sbjct 1176 CATCCATTGCCGGAATACAAATCCGTCCCGATTCACCGGAGCTTGAACATCGGAAACCAC 1235
Query 1247 CAACGTTCCTATTATAACACCCAGCGTCAAGAGTTCGTAGGGTATGGTTATGGGAATTTA 1306
|||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1236 CAACGTTCGTATTATAACAACCAGCGTCAAGAGTTCGTAGGGTATAATTATGGGAATTTA 1295
Query 1307 GCTGGAAGGTGTTACTACACGGGATCACCGTTGGATCATAGGAACATTGTTGGATCAGAG 1366
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1296 GCTGGAAGGTGTTACTACACGGGATCACCGTTAGATCAGAGGAACATTGTTGGATCAGAG 1355
Query 1367 CCGTTGGTTATAGACTCAGTCCCTGTGGTTCCCGGGAGATTAACTCCGGTGATGTTACCG 1426
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1356 CCGTTGGTTATAGACTCAGTCCCTGTGGTTCCCGGGAGATTAACCCCGGTGATATTACCA 1415
Query 1427 CCGCTTCCTCCGCCTCCTTCTACGGCGGGAAAGAGACTAAGGCTCTTTGGGGTGAATATG 1486
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1416 CCGCTTCCTCCGCCTCCTTCAACGGCGGGAAAGAGACTCAGGCTCTTTGGGGTGAATATG 1475
Query 1487 GAATGTGGCAATGACTATAATCAACAAGAAGAGTCATGGTTGGTGCCACGTGGCGAAATT 1546
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 GAATGTGGTATTGACTATAATCAACAAGAAGAGTCATGGTTGGTGCCACGTGGCGAAATG 1535
Query 1547 GGTGCAtcttcttcttcttcttcAGCTCTACGACTAAATTTATCGACtgatcatgatgat 1606
|||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1536 GGTGCA---TCTTCTTCTTCTTCAGCTCTACGACTAAACATATCAACTGATCATGATGAT 1592
Query 1607 gataatgatgatggtgatgatggcgatgatgatCAATTTGCTAAGAAAGGGAAGTCTTCA 1666
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1593 GATACTGATGATGGTGATGGTGGTGATGATGATCAATTTGCTAAGAAAGGGAAGTCTTCA 1652
Query 1667 CTTTCTCTCAATTTCAATCCATGAGAAGTTTCATCATCTTCTTGTTT-TGAATCTCTCTT 1725
||||||||||||||||||||||||||||||||||||||||||| || | ||| | | ||
Sbjct 1653 CTTTCTCTCAATTTCAATCCATGAGAAGTTTCATCATCTTCTTATTAGTAAAT-T-T-TT 1709
Query 1726 TATATTGTTTCATTAGTAATTTTTCTAAGGGTATTAGATTCTAGCTAGTGAGAGGAAGAA 1785
| | ||| ||||| | || ||| | || | || | || || || || |
Sbjct 1710 CA-AG-GTT--ATTAG-A-TT---CTA-GC-TAGT-GA-----G--AG-GA-AGAAATTA 1748
Query 1786 AAAACGATCTTCTTCGttttttt------GGTTATGAttttt-ttttCCGACATGTTTCT 1838
||||||||||||||||||||||| |||||||| |||| ||||| ||||||||| |
Sbjct 1749 AAAACGATCTTCTTCGTTTTTTTTTTTTTGGTTATGAATTTTGTTTTC-GACATGTTTTT 1807
Query 1839 TGATGTTCATCATCATTAGGCTTTTGTCACCATGTTGAAACTCGCATCTTTTCAATTTTG 1898
||||||| |||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1808 TGATGTTAATCA-C-T-AGGCTTTTGTCACCATGTTGAAACTCGCATCTTTTCAATTTTG 1864
Query 1899 TATAT 1903
|||||
Sbjct 1865 TATAT 1869
> Ahg943596 jgi|Araly1|943596|scaffold_604140.1
Length=1039
Score = 233 bits (126), Expect = 3e-60
Identities = 236/287 (82%), Gaps = 15/287 (5%)
Strand=Plus/Plus
Query 764 GAGAA-AGAACACATGTTCGACAAAGTGGTAACACCAAGCGACGTCGGAAAACTCAACAG 822
||||| ||| |||||||||||||||||| | |||||||| |||||||| ||||| ||| |
Sbjct 104 GAGAAGAGAGCACATGTTCGACAAAGTGTTGACACCAAGTGACGTCGGTAAACTAAACCG 163
Query 823 ACTCGTGATCCCTAAA-CAACACGCTGAGAGGTATTTCCCTCTAGACTCCTCAAACAACC 881
|||||||| || ||| ||||| || |||| || |||||| |||| ||| |
Sbjct 164 GCTCGTGATTCC-AAAGCAACATGCAGAGAACTACTTCCCTTTAGA------GGGCAATC 216
Query 882 AAAACGGCAC-GCTTTTGAACTTCCAAGACAGAAACGGCAAGATGTGGAGATTCCGTTAC 940
|||||||||| | | ||| | ||||||||||||||||||||||||||||| || ||||||
Sbjct 217 AAAACGGCACAG-TGTTGGATTTCCAAGACAGAAACGGCAAGATGTGGAGGTTTCGTTAC 275
Query 941 TCGTATTGGAACTCTAGCCAGAGCTACGTTATGACCAAAGGATGGAGCCGTTTCGTCAAA 1000
|||||||||||| |||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 276 TCGTATTGGAACAGTAGCCAAAGCTACGTGATGACCAAAGGATGGAGCCGTTTCGTTAAA 335
Query 1001 GAGAA-AAAGCTCGAT-GCAGGAGACATTGTCTCTTTCCAACGAGGC 1045
||||| ||| ||| | || ||||||| || |||||||| || |||
Sbjct 336 GAGAAGAAA-CTCT-TCGCCGGAGACACCGTGTCTTTCCACCGTGGC 380
> Ahg486704 jgi|Araly1|486704|fgenesh2_kg.5__2696__AT3G61970.1
Length=1363
Score = 196 bits (106), Expect = 4e-49
Identities = 225/280 (80%), Gaps = 17/280 (6%)
Strand=Plus/Plus
Query 769 AGAACACATGTTCGACAAAGTGGTAACACCAAGCGACGTCGGAAAACTCAACAGACTCGT 828
||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||
Sbjct 403 AGAACACATGTTCGACAAAGTGGTAACACCAAGCGACGTAGGCAAACTAAACCGACTCGT 462
Query 829 GATCCCTAAA-CAACACGCTGAGAGGTATTTCCC-TCTAGA---CTCCTCAAACAA-C-- 880
||| || ||| |||||||| ||||| || ||||| | |||| |||| ||| ||| |
Sbjct 463 GATACC-AAAGCAACACGCAGAGAGATACTTCCCAT-TAGATAACTCCACAA-CAAACGA 519
Query 881 CAA-AAC---GGCACGCTTTTGAACTTCCAAGACAGAAACGGCAAGATG-TGGAGATTCC 935
||| ||| || |||| | |||||| ||||| ||| ||| || | ||||| || |
Sbjct 520 CAACAACAAAGGTTTGCTTCTAAACTTCGAAGACCGAAGCGGAAAC-TCATGGAGGTTTC 578
Query 936 GTTACTCGTATTGGAACTCTAGCCAGAGCTACGTTATGACCAAAGGATGGAGCCGTTTCG 995
||||||| || |||||| ||| || ||||| || ||||| ||||| |||||||||||||
Sbjct 579 GTTACTCTTACTGGAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCCGTTTCG 638
Query 996 TCAAAGAGAAAAAGCTCGATGCAGGAGACATTGTCTCTTT 1035
||||||| || ||||| ||||| |||||||| || |||||
Sbjct 639 TCAAAGACAAGAAGCTTGATGCTGGAGACATCGTTTCTTT 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71571570355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5