BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01050.1
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909874 jgi|Araly1|909874|Al_scaffold_0001_128 1081 0.0
Ahg490426 jgi|Araly1|490426|fgenesh2_kg.6__3560__AT4G01480.1 686 0.0
> Ahg909874 jgi|Araly1|909874|Al_scaffold_0001_128
Length=639
Score = 1081 bits (585), Expect = 0.0
Identities = 621/639 (97%), Gaps = 0/639 (0%)
Strand=Plus/Plus
Query 126 ATGAGTGAAGAAACTAAAGATAACCAGAGGCTGCAGCGACCAGCTCCTCGTCTTAACGAG 185
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTGAAGTAACTGTAGATAACCAGAGGCTGCAGCGACCAGCTCCTCGTCTTAACGAG 60
Query 186 AGGATTCTCTCATCCTTGTCAAGAAGATCCGTAGCTGCTCATCCATGGCATGATCTTGAG 245
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 61 AGGATTCTCTCATCCTTGTCAAGAAGATCCGTAGCTGCACATCCCTGGCATGATCTTGAG 120
Query 246 ATTGGACCTGGAGCTCCACAGATTTTCAATGTGGTTGTTGAGATCACTAAAGGAAGCAAG 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTGGACCTGGAGCTCCACAGATTTTCAATGTGGTTGTTGAGATCACTAAAGGAAGCAAG 180
Query 306 GTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGGTTGATCGTATTCTCTACTCA 365
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGGTTGATCGTATTCTGTACTCA 240
Query 366 TCAGTTGTGTACCCTCACAACTATGGTTTTGTTCCTCGCACATTGTGTGAAGACAATGAC 425
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 241 TCAGTTGTGTACCCTCACAACTACGGTTTTGTTCCTCGTACATTGTGTGAAGACAATGAC 300
Query 426 CCCATTGATGTCTTAGTCATCATGCAGGAACCTGTGCTTCCGGGTTGTTTTCTGCGTGCC 485
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 CCCATTGATGTATTAGTCATCATGCAGGAACCTGTGCTTCCTGGTTGTTTTCTGCGTGCC 360
Query 486 AGAGCCATTGGATTAATGCCTATGATTGACCAGGGTGAAAAAGATGACAAGATCATTGCA 545
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAGCCATTGGATTAATGCCTATGATTGACCAGGGTGAAAAAGATGACAAGATCATTGCG 420
Query 546 GTGTGTGTTGATGATCCTGAATATAAGCACTACACTGACATCAAAGAACTTCCTCCTCAC 605
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 GTCTGTGTTGATGATCCTGAATATAAGCATTACACTGACATCAAAGAACTTCCTCCTCAC 480
Query 606 CGTCTCTCTGAAATCCGTCGTTTCTTCGAAGACTACAAGAAAAACGAGAACAAGGAAGTT 665
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 CGTCTCTCTGAAATCCGCCGTTTCTTTGAAGACTACAAGAAAAACGAGAACAAGGAAGTT 540
Query 666 GCAGTGAATGATTTTCTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAATGGAC 725
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 GCAGTGAATGATTTTCTGCCATCTGAGTCTGCTGTTGAAGCTATCCAGTACTCAATGGAC 600
Query 726 CTCTATGCTGAATACATTCTCCACACCCTGAGGCGTTGA 764
|||||||||||||||||||| || |||||||||||||||
Sbjct 601 CTCTATGCTGAATACATTCTTCATACCCTGAGGCGTTGA 639
> Ahg490426 jgi|Araly1|490426|fgenesh2_kg.6__3560__AT4G01480.1
Length=1042
Score = 686 bits (371), Expect = 0.0
Identities = 522/595 (88%), Gaps = 10/595 (2%)
Strand=Plus/Plus
Query 169 CTCCTCGTCTT-AACGAGAGGATTCTCTCATCCTTGTC-AAGAAGATCCGTAGCTGCTCA 226
|||| ||| || |||||||||||||||||||| ||||| ||| ||||| || ||||| ||
Sbjct 151 CTCCACGT-TTAAACGAGAGGATTCTCTCATCTTTGTCTAAG-AGATCGGTTGCTGCACA 208
Query 227 TCCATGGCATGATCTTGAGATTGGACCTGGAGCTCCACAGATTTTCAATGTGGTTGTTGA 286
|||||||||||||||||| || ||||||||||||||| |||||||||||||||| ||||
Sbjct 209 TCCATGGCATGATCTTGAAATCGGACCTGGAGCTCCAGTGATTTTCAATGTGGTTATTGA 268
Query 287 GATCACTAAA-GGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGG 345
|||| | ||| || ||||| |||||||| || ||||||||||| || |||||||||||||
Sbjct 269 GATCTC-AAAGGGGAGCAAAGTCAAATATGAACTTGACAAAAAAACTGGACTCATCAAGG 327
Query 346 TTGATCGTATTCTCTACTCATCAGTTGTGTACCCTCACAACTATGGTTTTGTTCCTCGCA 405
||||||| ||||| || || || |||||||| ||||| ||||| |||||||| || ||||
Sbjct 328 TTGATCGGATTCTGTATTCGTCGGTTGTGTATCCTCATAACTACGGTTTTGTCCCCCGCA 387
Query 406 CATTGTGTGAAGACAATGACCCCATTGATGTCTTAGTCATCATGCAGGAACCTGTGCTTC 465
|| | ||||||||||||||||| || ||||| ||||| ||||||||||| ||||||||||
Sbjct 388 CACTATGTGAAGACAATGACCCTATAGATGTTTTAGTTATCATGCAGGAGCCTGTGCTTC 447
Query 466 CGGGTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGGGTGAAA 525
||||||| ||||| || ||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct 448 CGGGTTGCTTTCTTCGCGCCCGAGCTATTGGTTTAATGCCTATGATTGACCAGGGTGAAA 507
Query 526 AAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATATAAGCACTA-CACTGAC 584
|||||||||||||||||||||| ||||||||||||||||| |||||||| || |||| ||
Sbjct 508 AAGATGACAAGATCATTGCAGTTTGTGTTGATGATCCTGAGTATAAGCA-TATCACTAAC 566
Query 585 ATCAAAGAACTTCCTCCTCACCGTCTCTCTGAAATCCGTCGTTTCTTCGAAGACTACAAG 644
||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||
Sbjct 567 ATCAATGAACTTCCTCCTCATCGTCTCTCTGAAATCCGTCGATTCTTTGAAGATTACAAG 626
Query 645 AAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTGAGTC-TGCGGTTGA 703
|| || |||||||| ||||||||||||||||||||||| | | ||| ||| ||| ||||
Sbjct 627 AAGAATGAGAACAAAGAAGTTGCAGTGAATGATTTTCTACAACCTG-GTCCTGCTATTGA 685
Query 704 AGCTATCCAGTACTCAATGGACCTCTATGCTGAATACATTCTCCACACCCTGAGG 758
||| || || |||||||||||||| || ||||| |||||||| ||||||||||||
Sbjct 686 AGCCATTCAATACTCAATGGACCTTTACGCTGAGTACATTCTTCACACCCTGAGG 740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36254894067
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5