BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01070.1
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918864 jgi|Araly1|918864|scaffold_100145.1 1770 0.0
Ahg919961 jgi|Araly1|919961|scaffold_101242.1 1075 0.0
Ahg334438 jgi|Araly1|334438|fgenesh1_pg.C_scaffold_1001003 202 6e-51
> Ahg918864 jgi|Araly1|918864|scaffold_100145.1
Length=1127
Score = 1770 bits (958), Expect = 0.0
Identities = 1073/1126 (95%), Gaps = 18/1126 (2%)
Strand=Plus/Plus
Query 64 AGATATGGCTGGAGATATGCA-AGGAGTGAGAGTAGTAGAAAAATATTCACCGGTCATAG 122
||| |||| || || |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 18 AGAGATGGGTGAAGGTATG-ATTGGAGTGAGAGTAGTAGAAAAATATTCACCGGTCATAG 76
Query 123 TGATGGTGATGTCAAATGTAGCGATGGGTTCGGTGAATGCACTTGTGAAGAAAGCTCTTG 182
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 TGATGGTGATGTCAAACGTAGCGATGGGTTCGGTGAATGCACTTGTGAAGAAAGCTCTTG 136
Query 183 ATGTTGGTGTGAACCATATGGTCATTGGTGCTTATCGAATGGCTATTTCCGCTTTAATTT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 137 ATGTTGGTGTGAACCATATGGTCATTGGTGCTTATCGAATGGCTATTTCCGCTTTCATTT 196
Query 243 TGGTTCCCTTTGCCTATGTCTTGGAAAGGAAAACAAGACCACAAATAACGTTTAGGCTAA 302
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 197 TGGTTCCCTTTGCCTATATCTTGGAAAGGAAAACAAGACCACAGATAACGTTTAGGCTAA 256
Query 303 TGGTCGATCATTTCGTCAGTGGCCTTCTCGGGGCGAGTTTGATGCAGTTTTTCTTTTTGC 362
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 257 TGATCGATCATTTCGTCAGTGGCCTTCTCGGGGCGAGTTTGATGCAATTTTTCTTTTTGC 316
Query 363 TTGGTCTGTCGTACACGTCAGCAACTGTTTCGTGTGCTTTGGTAAGCATGTTGCCTGCAA 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TTGGTCTGTCGTACACGTCAGCAACTGTTTCGTGTGCTTTGGTAAGCATGTTGCCTGCAA 376
Query 423 TCACCTTCGCTTTGGCCCTTATTTTCAGGACTGAAAATGTGAAGATTCTAAAGACCAAAG 482
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 377 TCACCTTCGCTTTGGCCCTTATTTTCAGGACTGAAAATGTAAAGATTCTAAAGACCAAAG 436
Query 483 CAGGAATGTTGAAGGTGATTGGAACTTTGATCTGTATAAGTGGAGCTTTGTTCTTAACAT 542
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 437 CAGGAATGTTGAAGGTGATTGGAACTTTGATATGTATAAGTGGAGCTTTGTTCTTAACAT 496
Query 543 TTTACAAAGGCCCACAAATATCAAACTCTCACTCTCACTCTCACGGTGGGGCTTCCCACA 602
|||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct 497 TTTACAAAGGCCCACAAATATCAAACTCTCACTCTCAC------GGAGAGGCTTCCCACA 550
Query 603 ACAACAACGATCAAGACAAGGCCAATAATTGGCTTCTTGGATGTCTTTATTTAACCATAG 662
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 551 ACAAAAACGATCAAGACAACGCCAATAATTGGCTTCTTGGATGTCTTTACTTAACCATAG 610
Query 663 GAACAGTGTTGCTATCTCTATGGATGTTGTTTCAAGGGACTTTAAGTATTAAGTACCCTT 722
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 GAACTGTGTTGCTATCTCTATGGATGTTGTTTCAAGGGACTTTAAGTATTAAGTACCCTT 670
Query 723 GCAAATACTCGAGCACTTGTCTTATGTCAATTTTCGCGGCATTTCAATGTGCTCTCTTGA 782
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 671 GCAAATACTCGAGCACTTGTCTTATGTCAATCTTCGCGGCATTCCAATGTGCTCTCTTGA 730
Query 783 GCCTTTACAAGAGCAGAGACGTTAATGATTGGATCATAGATGATAGATTCGTTATCACCG 842
| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 731 GTCTTTACAAAAGCAGAGACGTTAATGATTGGATCATCGATGATAGATTCGTGATCACCG 790
Query 843 TCATCATATACGCTGGAGTGGTAGGACAAGCAATGACGACGGTTGCAACAACATGGGGGA 902
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 791 TCATCATATACGCTGGAGTGGTAGGACAAGCAATGTCGACGGTAGCAACAACATGGGGGA 850
Query 903 TTAAA-AAATTAGGAGCTGTGTTCGCATCGGCGTTTTTCCCACTTACTCTCATTTCGGCT 961
| ||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 851 T-AAAGAAATTAGGAGCTGTGTTCGCATCGGCATTTTTTCCACTTACTCTCATTTCGGCT 909
Query 962 ACTCTATTTGATTTCCTCATTTTACACACTCCTTTATACCTTGGAAGTGTGATTGGATCA 1021
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 ACTCTATTTGATTTCCTAATTTTACACACTCCTTTATACCTTGGAAGTGTGATTGGATCA 969
Query 1022 CTAGTGACCATAACGGGTCTCTACATGTTCTTGTGGGGGAAGAACAAAGAAACGGAATCA 1081
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 970 CTAGTGACCATAACGGGTCTCTACATGTTTTTGTGGGGCAAGAACAAAGAAACGGAATCA 1029
Query 1082 TCAACTGCATTGTCTTCAGGAATGGATAACGAAGCTCAATATACTACTCCTAATAAGGAT 1141
||||||||||||||||| |||||||||| ||||||||| | | || | ||||||||||
Sbjct 1030 TCAACTGCATTGTCTTCTCGAATGGATAATGAAGCTCAA-A-A-TA-T--TAATAAGGAT 1083
Query 1142 AACGACTCTAAGTCGCCCGTTTAATTTAATTATATTGTTGTTAATG 1187
||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1084 AACGACTCTAAGTCGCCCGTTTAATTTAA--ATATTGTTGTTAATG 1127
> Ahg919961 jgi|Araly1|919961|scaffold_101242.1
Length=1051
Score = 1075 bits (582), Expect = 0.0
Identities = 898/1049 (86%), Gaps = 27/1049 (3%)
Strand=Plus/Plus
Query 60 AGAGAGATATG-GCTGGA-GATATGCAAGGAGTGAGAGTAGTAGAAAAATATTCACCGGT 117
||||||| ||| | | || |||||| |||||||| |||||| ||||| |||||||
Sbjct 13 AGAGAGAGATGAG-T-GAGGATATGGGAGGAGTGAAAGTAGTCTCAAAATGGCCACCGGT 70
Query 118 CATAGTGATGGTGATGTCA-AATGTAGCGATGGGTTCGGTGAATGCACTTGTGAAGAAAG 176
||||| ||||||| ||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 71 TATAGTTATGGTGACATCACAA-GTAGCGATGGGCTCGGTGAATGCACTTGTGAAGAAAG 129
Query 177 CTCTTGATGTTGGTGTGAACCATATGGTCATTGGTGCTTATCGAATGGCTATTTCCGCTT 236
|||| ||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 130 CTCTCGATGTTGGTGTGAACCATATGATCGTTGGTGCTTATCGAATGGCTATTTCCTCGC 189
Query 237 TAATTTTGGTTCCCT-TTGCCTATGTCTTGGAAAGGAAAACAAGACCACAAATAACGTTT 295
| ||| ||| | ||| |||||||| | ||||||||||||| || ||| ||||||||||||
Sbjct 190 TCATTCTGGCT-CCTATTGCCTATTTTTTGGAAAGGAAAATAATACCGCAAATAACGTTT 248
Query 296 AGGCTAATGGTCGATCATTTCGTCAGTGGCCTT-CTCGGGGCGAGTTTGATGCAGTTTTT 354
||||||||||||||||||||| ||||||| || |||||||| ||||||||||| |||||
Sbjct 249 AGGCTAATGGTCGATCATTTCATCAGTGG-TTTGCTCGGGGCAAGTTTGATGCAATTTTT 307
Query 355 CTTTTTGCTTGGTCTGTCGTACACGTCAGCAACTGTTTCGTGTGCTTTGGTAAGCATGTT 414
|| |||||| ||||||||||| ||||||||||||||| ||||||||||||||||| || |
Sbjct 308 CTATTTGCTGGGTCTGTCGTATACGTCAGCAACTGTTGCGTGTGCTTTGGTAAGCTTGAT 367
Query 415 GCCTGCAATCACCTTCGCTTTGGCCCTTATTTTCAGGACTGAAAATG-TGAAGATTCTAA 473
||||||||||||||||||||| || |||||||||||||||||||| | | || | |||||
Sbjct 368 GCCTGCAATCACCTTCGCTTTCGCTCTTATTTTCAGGACTGAAAA-GATAAAAAGTCTAA 426
Query 474 AGACCAAAGCAGGAATGTTGAAGGTGATTGGAACTTTGATCTGTATAAGTGGAGCTTTGT 533
||||| ||||||||||| | || ||||| |||||| | || |||||| ||||||||||||
Sbjct 427 AGACCCAAGCAGGAATGATAAAAGTGATGGGAACTATCATATGTATAGGTGGAGCTTTGT 486
Query 534 TCTTAACATTTTACAAAGGCCCACAAATATCAAACTCTCACTCTCACTCTCACGGTGGGG 593
|||||||||||||||||||||| || ||||||||||||||||||||| || || | |
Sbjct 487 TCTTAACATTTTACAAAGGCCCTCATATATCAAACTCTCACTCTCAC-CT-ACAG-GCT- 542
Query 594 CTTCC-CACAACAACAACGATCA-AGACAAGGCCAATAATTGGCTTCTTGGATGTCTTTA 651
||||| |||| ||||| | |||| | ||| |||| |||||||||||||||||||| ||
Sbjct 543 CTTCCTCACACCAACAGCAATCACA-ACA---CCAAGAATTGGCTTCTTGGATGTCTCTA 598
Query 652 TTTAACCATAGGAACAGTGTTGCTATCTCTATGGATGTTGTTTCAAGGGACTTTAAGTAT 711
||||||||||||| | ||||||| ||||||||||| ||||||||||||||||||| ||
Sbjct 599 CTTAACCATAGGAATAATGTTGCTGTCTCTATGGATCTTGTTTCAAGGGACTTTAAACAT 658
Query 712 TAAGTACCCTTGCAAATACTCGAGCACTTGTCTTATGTCAATTTTCGCGGCATTTCAATG 771
|||||||||||||||| ||| ||||||||||| |||||||||||||| || ||||| ||
Sbjct 659 CAAGTACCCTTGCAAATTCTCAAGCACTTGTCTCATGTCAATTTTCGCAGCTTTTCAGTG 718
Query 772 TGCTCTCTTGAGCCTTTACAAGAGCAGAGA-CGTTAATGATTGGATCATAGATGATAGAT 830
|||||| ||||| ||||||||||| ||||| | |||| |||||||||| |||||| |||
Sbjct 719 TGCTCTATTGAGTCTTTACAAGAGTAGAGATC-TTAAACATTGGATCATCGATGATGGAT 777
Query 831 TCGTTATCACCGTCATCATATACGCTGGAGTGGTAGGACAAGCAATGACGACGGTTGCAA 890
| || ||| |||||| |||| ||||||||| |||||||||||||| |||| || |||
Sbjct 778 TTGTGATCGGTGTCATCGTATATGCTGGAGTGATAGGACAAGCAATGTCGACTGTAGCAG 837
Query 891 CAACATGGGGGATTAAAAA-ATTAGGAGCTGTGTTCGCATCGGCGTTTTTCCCACTTACT 949
| |||||||| || ||| | |||||||||||| |||||||| || || | ||| || ||
Sbjct 838 CGACATGGGGAAT-AAAGAGATTAGGAGCTGTTTTCGCATCAGCAATTATGCCAGTTTCT 896
Query 950 CTCATTTCGGCTACTCTATTTGATTTCCTCATTTTACACACTCCTTTATACCTTGGAAGT 1009
|| ||||||||||||||||| |||||||| || ||| |||||||||||||||| ||||||
Sbjct 897 CTAATTTCGGCTACTCTATTCGATTTCCTAATCTTAGACACTCCTTTATACCTCGGAAGT 956
Query 1010 GTGATTGGATCACTAGTGACCATAACGGGTCTCTACATGTTCTTGTGGGGGAAGAACAAA 1069
|||||||||||| |||| || |||| ||||| ||| ||||||||||||| |||||||||
Sbjct 957 GTGATTGGATCAGTAGTAACAATAATAGGTCTTTACGTGTTCTTGTGGGGTAAGAACAAA 1016
Query 1070 GAAACGGAATCATCAACTGCATTGTCTTC 1098
|||| |||| ||| |||| ||||||||||
Sbjct 1017 GAAATGGAAGCAT-AACTACATTGTCTTC 1044
> Ahg334438 jgi|Araly1|334438|fgenesh1_pg.C_scaffold_1001003
Length=831
Score = 202 bits (109), Expect = 6e-51
Identities = 169/198 (85%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 77 GATATGCAAGGAGTGAGAGTAGTAGAAAAATATTCACCGGTCATAGTGATGGTGATGTC- 135
||||||| ||||| || |||||| ||||| ||||| | ||||| ||| | || ||
Sbjct 10 GATATGCGAGGAGAGAAAGTAGTCTCAAAATGGCCACCGATTATAGTAATGTTAATATCT 69
Query 136 AAATGTAGCGATGGGTTCGGTGAATGCACTTGTGAAGAAAGCTCTTGATGTTGGTGTGAA 195
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 CAA-GTAGCGATGGGTTCGGTGAATGCACTTGTGAAGAAAGCTCTTGATGTTGGTGTGAA 128
Query 196 CCATATGGTCATTGGTGCTTATCGAATGGCTATTTCCGCTTTAATTTTGGTTCCCTTT-G 254
||||||| || |||||||||||||||||||||||||| |||| ||| ||| ||| | | |
Sbjct 129 CCATATGATCGTTGGTGCTTATCGAATGGCTATTTCCTCTTTCATTCTGGCTCC-TATCG 187
Query 255 CCTATGTCTTGGAAAGGA 272
||||| | ||||||||||
Sbjct 188 CCTATATTTTGGAAAGGA 205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5