BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01090.1
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470171 jgi|Araly1|470171|fgenesh2_kg.1__125__AT1G01090.1 2141 0.0
Ahg922861 jgi|Araly1|922861|scaffold_104142.1 174 2e-42
> Ahg470171 jgi|Araly1|470171|fgenesh2_kg.1__125__AT1G01090.1
Length=1539
Score = 2141 bits (1159), Expect = 0.0
Identities = 1373/1470 (93%), Gaps = 40/1470 (3%)
Strand=Plus/Plus
Query 119 CAATGGCGACGGCTTTCGCTCCCACTAAGCTCACTGCCACGGTTCCTCTGCATGGATCCC 178
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 75 CAATGGCGACGGCTTTCGCTCCCACTAAGCTCACTGCCACGGTTCCTCTCCATGGATCTC 134
Query 179 ATGAGAATCGTCTCTTGCTCCCGATCCGATTGG---CTCC-TC--CTTCTTCTTTCCTCG 232
| ||||||||||||||||| ||||||||||||| |||| || |||||||||||||||
Sbjct 135 AAGAGAATCGTCTCTTGCTTCCGATCCGATTGGCTCCTCCTTCTTCTTCTTCTTTCCTCG 194
Query 233 GATCCACCCGTTCCCTCTCC-------C-T-TCGCAGACTCAATCACTCCAACGCCACCC 283
||||||| ||||||||| || | | ||||| |||||||||||||||||||||||
Sbjct 195 GATCCACTCGTTCCCTCACCATTAATTCTTCTCGCAAACTCAATCACTCCAACGCCACCC 254
Query 284 GTCGATCTCCCGTCGTCTCTGTCCAGGAAGTTGTCAAGGAGAAGCAATCCACCAATAATA 343
||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||
Sbjct 255 GTCGATCTCCCGTCGTCGCTGTTCAAGAAGTTGTCAAGGAGAAGCAATCCACCAATAAT- 313
Query 344 CCAGCCTGTTGATAACCAAAGAGGAAGGATTGGAGTTGTATGAAGATATGATACTAGGTA 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 --AGCCTGTTGATAACCAAAGAGGAAGGATTGGAGTTGTATGAAGATATGATACTAGGTA 371
Query 404 GATCTTTCGAAGACATGTGTGCTCAAATGTATTACCGAGGCAAGATGTTTGGTTTTGTTC 463
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 372 GATCTTTCGAAGACATGTGTGCTCAAATGTATTACAGAGGGAAGATGTTTGGTTTTGTTC 431
Query 464 ACTTGTACAATGGCCAAGAGGCTGTTTCTACTGGCTTTATCAAGCTCCTTACCAAGTCTG 523
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 432 ACTTGTACAATGGCCAAGAAGCTGTTTCTACTGGCTTTATCAAGCTCCTTACCAAGAGTG 491
Query 524 ACTCTGTCGTTAGTACCTACCGTGACCATGTCCATGCCCTCAGCAAAGGTGTCTCTGCTC 583
| || || |||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 492 ATTCAGTGGTTAGTACTTACCGTGATCATGTCCATGCGCTCAGCAAAGGTGTCTCTGCTC 551
Query 584 GTGCTGTTATGAGCGAGCTCTTCGGCAAGGTTACTGGATGCTGCAGAGGCCAAGGTGGAT 643
||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 552 GTGCTGTTATGAGTGAGCTCTTCGGGAAGGTTACGGGATGCTGCAGAGGTCAAGGTGGAT 611
Query 644 CCATGCACATGTTCTCCAAAGAACACAACATGCTTGGTGGCTTTGCTTTTATTGGTGAAG 703
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 612 CCATGCACATGTTCTCTAAAGAACACAACATGCTTGGTGGGTTTGCTTTTATTGGTGAAG 671
Query 704 GCATTCCTGTCGCCACTGGTGCTGCCTTT-AGCTCCAAGTACAGGAGGGAAGTCTTGAAA 762
| ||||| || ||||||||||||| |||| ||||| ||||||||||||||||||||||||
Sbjct 672 GGATTCCAGTGGCCACTGGTGCTG-CTTTCAGCTCTAAGTACAGGAGGGAAGTCTTGAAA 730
Query 763 CAGGATTGTGATGATGTCACTGTCGCCTTTTTCGGAGATGGAACTTGTAACAACGGACAG 822
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 731 CAGGATTGTGAAGATGTCACTGTCGCGTTTTTCGGAGATGGAACTTGTAATAACGGACAG 790
Query 823 TTCTTCGAGTGTCTCAACATGGCTGCTCTCTATAAACTGCCTATTATCTTTGTTGTCGAG 882
|||| ||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 791 TTCTACGAGTGTCTGAACATGGCTGCTCTGTATAAACTGCCTATTATCTTTGTTGTGGAG 850
Query 883 AATAACTTGTGGGCCATTGGGATGTCTCACTTGAGAGCCACTTCTGACCCCGAGATTTGG 942
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 851 AATAACTTGTGGGCGATTGGGATGTCTCACTTGAGAGCTACTTCTGACCCCGAGATATGG 910
Query 943 AAGAAAGGTCCTGCATTTGGGATGCCTGGTGTTCATGTTGACGGTATGGATGTCTTGAAG 1002
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 911 AAGAAAGGTCCTGCTTTTGGGATGCCGGGTGTTCATGTTGACGGTATGGATGTGTTGAAG 970
Query 1003 GTCAGGGAAGTCGCTAAAGAAGCTGTCACTAGAGCTAGAAGAGGAGAAGGTCCAACCTTG 1062
|| |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 971 GTGAGGGAAGTGGCTAAAGAGGCAGTCACTAGAGCTAGAAGAGGAGAAGGTCCAACCTTG 1030
Query 1063 GTTGAATGTGAGACTTATAGATTCAGAGGACACTCCTTGGCTGATCCCGATGAGCTCCGT 1122
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1031 GTTGAATGTGAGACTTATAGATTCAGAGGACACTCGTTGGCTGATCCTGATGAGCTCCGT 1090
Query 1123 GATGCTGCTGAGAAAGCCAAATACGCGGCTAGAGACCCAATCGCAGCATTGAAGAAGTAT 1182
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1091 GATGCTGCTGAGAAAGCCAAATACGCGGCTAGAGACCCAATCGCAGCACTGAAGAAGTAT 1150
Query 1183 TTGATAGAGAACAAGCTTGCAAAGGAAGCAGAGCTAAAGTCAATAGAGAAAAAGATAGAC 1242
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1151 TTGATAGAGAACAAGCTTGTGAAGGAAGCAGAGCTAAAGTCAATAGAGAAAAAGATAGAC 1210
Query 1243 GAGTTGGTGGAGGAAGCGGTTGAGTTTGCAGACGCTAGTCCACAGCCCGGTCGCAGTCAG 1302
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1211 GAGTTGGTGGAGGAAGCGGTTGAGTTTGCAGACGCGAGTCCACAGCCCGGTCGCAGTCAG 1270
Query 1303 TTGCTAGAGAATGTGTTTGCTGATCCAAAAGGATTTGGAATTGGACCTGATGGACGGTAC 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 TTGCTAGAGAATGTGTTTGCTGATCCAAAAGGATTTGGAATTGGACCTGATGGACGGTAC 1330
Query 1363 AGATGTGAGGACCCCAAGTTTACCGAAGGCACAGCTCAAGTCTGAGAAGACAAGTTTAAC 1422
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1331 AGATGTGAGGACCCCAAGTTTACTGAAGGAACAGCTCAAGTCTGAGAAGACAAGTTTAAC 1390
Query 1423 CATAAGCTGTCTACTGTCT----CTTC-----GATGTTTCTATATATCTTATTAAGTTAA 1473
||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1391 CATAAGCTGTCTACTGTCTTTGGCTTCTCTTTGATGTTTCTATATATCTTATTAAGTTAA 1450
Query 1474 ATGCTACAGAGAATCAGTTTGAATCATTTGCACTTTTTGCTT-T-TT-----GT-TTGG- 1524
|||||||||||||||||||||||||||||| ||||||||||| | || || ||||
Sbjct 1451 ATGCTACAGAGAATCAGTTTGAATCATTTGAACTTTTTGCTTCTCTTTTTTTGTGTTGGG 1510
Query 1525 TGTTACTAAA-CTATCACAAGGTTCTTCTT 1553
|||||||||| | |||||||||||||||||
Sbjct 1511 TGTTACTAAATC-ATCACAAGGTTCTTCTT 1539
> Ahg922861 jgi|Araly1|922861|scaffold_104142.1
Length=307
Score = 174 bits (94), Expect = 2e-42
Identities = 107/113 (95%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 368 AAGGATTGGAGTTGTATGAAGATATGATACTAGGTAGATCTTTCGAAGACATGTGTGCTC 427
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 55 AAGGATTGGAGTTGTATGAAGACATGATACTAGGTAGATCTGTCGAAGACATGTGTGCTC 114
Query 428 AAATGTATTACCGAG-GCAAGATGTTTGGTTTTGTTCACTTGTACAATGGCCA 479
|||| |||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 115 AAATATATTACAGAGAG-AAGATGTTTGGTTTTGTTCACTTGTACAATGGCCA 166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60982482245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5