BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G01100.1

Length=587
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg311324 jgi|Araly1|311324|fgenesh1_pm.C_scaffold_1000104           540    5e-153
  Ahg330665 jgi|Araly1|330665|fgenesh1_pm.C_scaffold_8000008           484    2e-136
  Ahg490484 jgi|Araly1|490484|fgenesh2_kg.6__3618__AT4G00810.1         285    2e-76 


> Ahg311324 jgi|Araly1|311324|fgenesh1_pm.C_scaffold_1000104
Length=342

 Score =  540 bits (292),  Expect = 5e-153
 Identities = 326/342 (95%), Gaps = 3/342 (1%)
 Strand=Plus/Plus

Query  55   ATGTCGACAGTTGGAGAGCTTGCTTGCAGCTACGCTGTTATGATCCTCGAGGACGAGGGT  114
            |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct  1    ATGTCGACAGTTGGTGAGCTTGCTTGCAGTTACGCTGTTATGATCCTCGAAGACGAGGGT  60

Query  115  ATCGCTATCACGGCTGACAAAATCGCGACCTTGGTGAAAGCTGCTGGTGTTAGTATTGAG  174
            || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  61   ATTGCTATTACGGCTGACAAAATCGCGACTTTGGTGAAAGCTGCTGGTGTTAGTATTGAG  120

Query  175  TCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAACGTGACTGATCTCATC  234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAACGTGACTGATCTCATC  180

Query  235  ATGAACGTtggtgctggtggtggaggtggtgctccggttgcagctgctgctccagctgct  294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATGAACGTTGGTGCTGGTGGTGGAGGTGGTGCTCCGGTTGCAGCTGCTGCTCCAGCTGCT  240

Query  295  ggcggtggtgc-g--gcagctgctcctgctgctgAGGAGAAGAAGAAGGATGAGCCAGCA  351
            ||||||||||| |  ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct  241  GGCGGTGGTGCTGCAGCAGCTGCTCCTGCTGCCGAGGAGAAGAAGAAGGATGAACCAGCA  300

Query  352  GAAGAGAGTGACGGAGATTTGGGTTTCGGTTTGTTTGACTAA  393
            ||||||||||| ||||||||||| ||||| ||||| || |||
Sbjct  301  GAAGAGAGTGATGGAGATTTGGGATTCGGCTTGTTCGATTAA  342


> Ahg330665 jgi|Araly1|330665|fgenesh1_pm.C_scaffold_8000008
Length=336

 Score =  484 bits (262),  Expect = 2e-136
 Identities = 314/339 (93%), Gaps = 3/339 (1%)
 Strand=Plus/Plus

Query  55   ATGTCGACAGTTGGAGAGCTTGCTTGCAGCTACGCTGTTATGATCCTCGAGGACGAGGGT  114
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCGACAGTGGGAGAGCTTGCTTGCAGCTACGCTGTTATGATCCTCGAGGACGAGGGT  60

Query  115  ATCGCTATCACGGCTGACAAAATCGCGACCTTGGTGAAAGCTGCTGGTGTTAGTATTGAG  174
            || ||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct  61   ATTGCTATCACGGCTGACAAAATCGCCACTTTGGTGAAAGCTGCTGGTGTTACTATTGAG  120

Query  175  TCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAACGTGACTGATCTCATC  234
            |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct  121  TCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAATGTCACTGATCTAATC  180

Query  235  ATGAACGTtggtgctggtggtggaggtggtgctccggttgcagctgctgctccagctgct  294
            ||||||||||||||||||||||||||||||||||| ||||| |||||||||   ||||| 
Sbjct  181  ATGAACGTTGGTGCTGGTGGTGGAGGTGGTGCTCCCGTTGCTGCTGCTGCT---GCTGCC  237

Query  295  ggcggtggtgcggcagctgctcctgctgctgAGGAGAAGAAGAAGGATGAGCCAGCAGAA  354
            || |||| |||  |||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct  238  GGTGGTGCTGCCTCAGCTGCTCCTGCTGCAGAGGAGAAGAAGAAGGACGAACCAGCAGAA  297

Query  355  GAGAGTGACGGAGATTTGGGTTTCGGTTTGTTTGACTAA  393
            |||||||| ||||||||||||||||| ||||| || |||
Sbjct  298  GAGAGTGATGGAGATTTGGGTTTCGGCTTGTTCGATTAA  336


> Ahg490484 jgi|Araly1|490484|fgenesh2_kg.6__3618__AT4G00810.1
Length=568

 Score =  285 bits (154),  Expect = 2e-76
 Identities = 283/343 (83%), Gaps = 17/343 (5%)
 Strand=Plus/Plus

Query  54   aaTGTCGACAGTTGGAGAGCTTGCTTGCAGCTACGCTGTTATGATCCTCGAGGACGAGGG  113
            ||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct  105  AATGTCGACTGTGGGAGAACTTGCTTGCAGCTACGCTGTTATGATCCTTGAGGACGAGGG  164

Query  114  TATCGCTATCACGGCTGACAAAATCGCGAC-CTTGGTGAAAGCTGCTGGTGTT-AGTATT  171
             || || |||||  |||| || || ||||| || ||| ||||||||||||||| ||  ||
Sbjct  165  CATTGCCATCACTTCTGATAAGATTGCGACTCT-GGTCAAAGCTGCTGGTGTTGAGG-TT  222

Query  172  GAGTCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAA-ACGTAACGTGACTGATCT  230
            ||||| | ||||||||||||||| ||||||||||||||||| | | || || || || ||
Sbjct  223  GAGTCTTTCTGGCCAATGCTATTTGCCAAGATGGCTGAGAAGA-GAAATGTCACCGACCT  281

Query  231  CATCATGAACGTtggtgc---tggtggtggaggtggtgctccggt-tgcagctgctgctc  286
            ||||||||| ||||||||   |||||||||||| ||||| || || | | ||||| || |
Sbjct  282  CATCATGAATGTTGGTGCCGGTGGTGGTGGAGGCGGTGCCCCCGTGT-CTGCTGCCGCAC  340

Query  287  cagctgctggc-ggtggtgcggcagctgct-cctgctgctgAGGAGAAGAAGAAGGATGA  344
            | ||||||| | || || ||  | |||||| ||  ||||| ||||| |||||||||||||
Sbjct  341  CTGCTGCTG-CTGGAGGAGCTACTGCTGCTGCCC-CTGCTAAGGAGGAGAAGAAGGATGA  398

Query  345  GCCAGCAGAAGAGAGTGACGGAGAT-TTGGGTTTCGGTTTGTT  386
             || |||||||| ||||| |||||| |||| |||||| |||||
Sbjct  399  ACCCGCAGAAGAAAGTGATGGAGATCTTGG-TTTCGGCTTGTT  440



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21481596607


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5