BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01110.2
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333544 jgi|Araly1|333544|fgenesh1_pg.C_scaffold_1000109 2477 0.0
Ahg493422 jgi|Araly1|493422|fgenesh2_kg.7__2855__AT4G14750.1 91.6 2e-17
> Ahg333544 jgi|Araly1|333544|fgenesh1_pg.C_scaffold_1000109
Length=1584
Score = 2477 bits (1341), Expect = 0.0
Identities = 1509/1590 (95%), Gaps = 12/1590 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAAAAAGAACGGCTCTTCTTCTTGGCTCACCGCT-GT-AAAGCGAGCTTTCCGAT 58
|||||||||||||||||||||||||||||||| |||| | || ||| |||||||||||||
Sbjct 1 ATGGGGAAAAAGAACGGCTCTTCTTCTTGGCTTACCG-TCGTGAAA-CGAGCTTTCCGAT 58
Query 59 CTCCGACGAAGAAAGATCATAGTAATGACGTCgaagaagatgaagaaaagaagagagaga 118
||||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct 59 CTCCGACCAAGAAAGATCATAATAACGACGTCGAAGAAGATGAGGAAAAGAAGAGAGAGA 118
Query 119 agagaCGGTGGTTTAGAAAACCGGCGACTCAAGAATCTCCGGTGAAGTCTTCCGGTATCT 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGAGACGGTGGTTTAGAAAACCGGCGACTCAAGAATCTCCGGTGAAGTCTTCCGGTATCT 178
Query 179 CTCCACCAG-CACCTCAGGAAGATTCACTTAACGTAAACTCA-AAACCCTCTCCGGAGAC 236
|||| || | |||| | |||| ||| |||||| ||||||| ||| | |||||||||||
Sbjct 179 CTCCGCC-GCCACCACCTCAAGAATCAGTTAACGCAAACTCACAAA-CTTCTCCGGAGAC 236
Query 237 AGCACCGAGTTACGCAACTACGACGCCGCCATCCAACGCCGGTAAACCC-CCGTCCGCCG 295
|||||||||||||||||| ||||||||| ||| |||||||| |||||| ||||||||||
Sbjct 237 AGCACCGAGTTACGCAACGACGACGCCGTTATCGAACGCCGG-AAACCCTCCGTCCGCCG 295
Query 296 TAGTCCCCATCGCCACGTCAGCATCTAAGACACTCGCACCGAGGCGGATTTATTACGCAA 355
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 296 TCGTCCCCATCGCCACGTCAGCATCTAAGACACTCGCACCGAGAAGGATTTATTACGCAA 355
Query 356 GAGAAAATTACGCTGCTGTTGTCATCCAGACTTCTTTCAGAGGATATTTGGCAAGAAGAG 415
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 356 GAGAAAATTACGCTGCTGTTGTTATCCAGACTTCTTTCAGAGGATATTTGGCAAGAAGAG 415
Query 416 CATTAAGAGCATTAAAAGGGTTAGTGAAGCTACAAGCATTGGTGAGGGGACATAATGTGA 475
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 416 CATTAAGAGCATTAAAAGGGTTAGTGAAGCTACAAGCATTGGTGAGGGGTCATAATGTGA 475
Query 476 GAAAGCAAGCTAAAATGACATTAAGGTGTATGCAAGCTCTGGTTCGAGTCCAGTCTCGTG 535
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GAAAACAAGCCAAAATGACATTAAGGTGTATGCAAGCTCTGGTTCGAGTCCAGTCTCGTG 535
Query 536 TGCTTGACCAACGCAAACGCTTGTCTCATGACGGTAGTCGCAAATCCGCGTTCAGTGACT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 536 TGCTTGACCAACGCAAACGCTTGTCTCATGACGGTAGTCGCAAATCCGCGTTCAGCGACT 595
Query 596 CTCACGCTGTTTTTGAATCTCGCTATCTTCAAGATTTGTCAGATCGACAATCCATGTCAA 655
|||||||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 596 CTCACGCTGTTTATGAATCTCGATATCTTCAAGAGATATCAGATCGACAATCCATGTCAA 655
Query 656 GAGAAGGAAGCAGCGCCGCGGAAGATTGGGATGACCGACCACACACGATAGACGCAGTGA 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 656 GAGAAGGAAGCAGCGCCGCGGAAGATTGGGATGACCGACCACACACGATAGACGAAGTGA 715
Query 716 AAGTGATGCTACAACGGAGACGGGACACAGCATTGAGACATGACAAGACTAATTTGTCAC 775
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 716 AAGCGATGCTACAACGGAGACGGGACACAGCATTGAGACATGAGAAGACTAATTTGTCTC 775
Query 776 AAGCTTTCTCTCAAAAGATGTGGAGGACGGTTGGTAACCAATCCACGGAAGGACACCACG 835
|||||||||||||| | |||||||| |||||| ||||||||||| || |||| ||||||
Sbjct 776 AAGCTTTCTCTCAACATATGTGGAGAACGGTTCGTAACCAATCCGTGGGAGGAGACCACG 835
Query 836 AGGTAGAACTTGAAGAGGAAAGGCCAAAATGGCTTGACCGGTGGATGGCTACTAGACCGT 895
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 836 AGGTGGAACTTGAGGAGGAAAGACCAAAATGGCTTGACCGGTGGATGGCTACTAGACCGT 895
Query 896 GGGATAAACGAGCTAGTAGTAGAGCTTCGGTTGACCAAAGGGTTTCAGTTAAAACCGTTG 955
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 896 GGGATAAACGAGCTAGTAGTAGAGCTTCGGTTGACCAAAGGATTTCAGTTAAAACCGTTG 955
Query 956 AAATCGACACTTCTCAGCCTTACTCAAGAACAGGAGCAGGAAGCCCGAGTCGTGGCCAAA 1015
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 956 AAATCGACACTTCTCAGCCTTACTCAAGAACAAGAACAGGAAGCCCGAGTCGTAGCCAAA 1015
Query 1016 GACCTAGTTCCCCATCAAGAACTAGCCACCATTACCAATCCCGCAATAATTTCTCAGCCA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GACCTAGTTCCCCATCAAGAACTAGCCACCATTACCAATCCCGCAATAATTTCTCAGCCA 1075
Query 1076 CTCCATCTCCGGCTAAGTCTAGACCAATACTTATTCGGTCAGCTAGTCCACGGTGCCAGA 1135
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1076 CTCCATCTCCGGCTCAGTCTAGACCAATACATATTCGGTCAGCTAGTCCACGGTGCCAGA 1135
Query 1136 GAGACCCGAGGGAAGACCGTGACCGAGCAGCTTATAGTTATACATCAAACACACCAAGCT 1195
||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||
Sbjct 1136 GAGACCCGAGGGAAGACCGGGACCGAGTAGCTTATAGTTACACATCAAACACACCAAGCT 1195
Query 1196 TGAGATCCAATTATAGTTTCACAGCTAGGAGTGGATGTAGCATTAGTACCACAATGGTTA 1255
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TGAGATCTAACTATAGTTTCACAGCTAGGAGTGGATGTAGCATTAGTACCACAATGGTTA 1255
Query 1256 ATAATGCATCATTGTTGCCTAATTACATGGCGAGTACAGAGTCAGCTAAAGCGAGGATCC 1315
||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||
Sbjct 1256 ATAATGCATCATTGTTGCCTAATTACATGGCTAGTACGGAGTCGGCTAAGGCGAGGATCC 1315
Query 1316 GGTCTCATAGTGCACCGAGGCAACG-GCCCTCAACTCCCGAGAGGGACCGTGCGGGTTTG 1374
||||||| || |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1316 GGTCTCAGAGCGCACCGAGGCAACGAG-CCTCAACTCCCGAGAGGGACCGTGCGGGTTTG 1374
Query 1375 GTCAAGAAACGGCTCTCGTATCCGGTACCACCGCCAGCGGAGTATGAGGACAATAATAGC 1434
|||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct 1375 GTCAAGAAACGGCTCTCGTACCCTGTACCCCCGCCAGCGGAATATGAGGACAATAATAGC 1434
Query 1435 TTAAGGAGTCCAAGCTTTAAGAGTGTGGCTGGTTCACATTTTGGTGGAATGTTAGAGCAG 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 TTAAGGAGTCCAAGCTTTAAGAGTGTGGCTGGTTCACATTTTGGTGGAATGTTAGAGCAG 1494
Query 1495 CAATCGAATTACTCTTCATGTTGCACTGAGTCTAACGGTGTTGAGATCTCTCCAGCTTCT 1554
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1495 CAATCGAATTACTCTTCATGTTGCACTGAGTCTAATGGTATTGAGATCTCTCCAGCTTCT 1554
Query 1555 ACTAGTGACTTTAGGAATTGGCTTAGATGA 1584
||||||||||||||||||||||||||||||
Sbjct 1555 ACTAGTGACTTTAGGAATTGGCTTAGATGA 1584
> Ahg493422 jgi|Araly1|493422|fgenesh2_kg.7__2855__AT4G14750.1
Length=1310
Score = 91.6 bits (49), Expect = 2e-17
Identities = 96/117 (82%), Gaps = 10/117 (9%)
Strand=Plus/Plus
Query 401 ATTTGGC-AAGAAGAGCATTAAGAGCATTAAAAGGGTTAGTGAAGCTACAAGCATTGGTG 459
||||||| | ||| |||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 409 ATTTGGCGAGGAA-AGCATTAAGAGCATTAAAAGGGTTAGTGAAATTACAAGCACTAGTG 467
Query 460 AGGGGACATA-ATGTGAG-AAAGCAAGCTAA-AATGACA-TTAAGGTGTATGCAAGC 512
|| || ||| | ||||| ||| ||||| || || ||| ||| | |||||||||||
Sbjct 468 AGAGGTCATTTA-GTGAGGAAA-CAAGC-AACAACAACACTTA-GATGTATGCAAGC 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66886470220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5