BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01140.3
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470161 jgi|Araly1|470161|fgenesh2_kg.1__115__AT1G01140.3 2422 0.0
> Ahg470161 jgi|Araly1|470161|fgenesh2_kg.1__115__AT1G01140.3
Length=1525
Score = 2422 bits (1311), Expect = 0.0
Identities = 1415/1465 (97%), Gaps = 7/1465 (0%)
Strand=Plus/Plus
Query 104 GAAAAAGAAAATGAGTGGAAGCAGAAGGAA-G-G-CGACGCCGGCGAGTAGGACGCGAGT 160
||| |||||||||||||| ||||||||||| | | |||||||||||||||||||||||||
Sbjct 1 GAAGAAGAAAATGAGTGGGAGCAGAAGGAAGGCGACGACGCCGGCGAGTAGGACGCGAGT 60
Query 161 AGGGAATTACGAGATGGGACGAACTCTCGGAGAAGGAAGCTTCGCTAAGGTGAAATACGC 220
||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 AGGGAATTATGAGATGGGAAGAACTCTAGGAGAAGGAAGCTTCGCTAAGGTGAAATACGC 120
Query 221 CAAGAACACCGTCACCGGAGATCAAGCCGCTATCAAAATCCTCGACCGAGAAAAGGTCTT 280
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGGAACACCGTCACCGGAGATCAAGCCGCTATCAAAATCCTCGACCGAGAAAAGGTCTT 180
Query 281 CCGTCACAAAATGGTCGAACAGCTTAAAAGAGAAATATCTACAATGAAACTGATTAAACA 340
||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||
Sbjct 181 CCGTCACAAAATGGTCGAACAGCTTAAAAGAGAGATATCGACAATGAAATTGATTAAACA 240
Query 341 TCCAAATGTGGTTGAAATCATTGAGGTTATGGCGAGCAAAACGAAGATCTATATCGTTCT 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCAAATGTGGTTGAAATCATTGAGGTTATGGCGAGCAAAACGAAGATCTATATCGTTCT 300
Query 401 TGAGCTTGTCAATGGAGGTGAACTCTTTGATAAAATCGCGCAACAAGGGAGGCTTAAGGA 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGAGCTTGTCAATGGAGGTGAACTCTTTGATAAAATCGCGCAACAAGGGAGGCTTAAGGA 360
Query 461 GGATGAAGCTCGGAGATATTTTCAGCAGCTCATCAATGCTGTGGATTACTGCCACAGTCG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGATGAAGCTCGGAGATATTTTCAGCAGCTCATCAATGCTGTGGATTACTGCCACAGTCG 420
Query 521 AGGTGTCTACCACAGAGATCTCAAGCCTGAAAATCTGATCCTTGACGCAAATGGGGTTTT 580
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 421 AGGTGTCTACCACAGAGATCTCAAGCCTGAAAATCTTATCCTTGATGCAAATGGGGTTTT 480
Query 581 GAAAGTCTCTGATTTTGGGTTAAGCGCCTTCTCACGACAAGTTCGGGAAGATGGTTTGCT 640
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 GAAAGTCTCTGATTTTGGGTTAAGCGCGTTCTCACGACAAGTTCGGGAAGATGGTTTGCT 540
Query 641 TCATACAGCTTGTGGAACGCCAAACTACGTTGCCCCTGAGGTTTTGTCGGACAAAGGCTA 700
||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 541 TCACACAGCTTGTGGAACGCCAAACTACGTTGCTCCTGAGGTTTTATCAGACAAAGGCTA 600
Query 701 TGACGGTGCAGCAGCAGATGTCTGGTCTTGTGGTGTCATTCTCTTTGTGCTTATGGCTGG 760
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 601 TGACGGTGCAGCAGCAGATGTCTGGTCTTGTGGTGTAATTCTCTTTGTGCTCATGGCTGG 660
Query 761 TTACTTGCCTTTTGATGAGCCGAATCTCATGACATTATACAAACGTATATGCAAGGCTGA 820
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 661 TTACTTGCCTTTTGATGAGCCAAATCTCATGACATTATACAAACGTATATGCAAGGCCGA 720
Query 821 GTTTAGCTGCCCACCATGGTTCTCGCAAGGTGCCAAGAGAGTCATCAAGCGTATTCTCGA 880
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 721 GTTTAGCTGCCCACCATGGTTCTCGCAAGGTGCCAAGAGAGTCATTAAGCGTATTCTCGA 780
Query 881 ACCCAACCCTATTACCAGAATAAGTATTGCAGAGTTGCTCGAAGATGAATGGTTCAAGAA 940
|||||||||||| ||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 781 ACCCAACCCTATAACCAGAATAAGTATTGCAGAGCTACTAGAAGATGAATGGTTCAAGAA 840
Query 941 AGGGTACAAGCCGCCATCATTTGACCAAGATGACGAGGACATAACCATAGATGATGTTGA 1000
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 841 AGGGTACAAGCCGCCATCATTTGACCAAGATGATGAGGACATAACCATAGATGATGTTGA 900
Query 1001 TGCTGCTTTTAGTAACTCCAAGGAATGTCTTGTAACTGAGAAGAAGGAGAAACCTGTATC 1060
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 901 TGCTGCTTTTAGTAACTCCAAGGAATGTCTTGTAACAGAGAAGAAGGAGAAACCGGTATC 960
Query 1061 CATGAACGCTTTCGAACTTATCTCTAGCTCAAGCGAGTTCAGTCTTGAAAACTTGTTCGA 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CATGAACGCTTTCGAACTTATCTCTAGCTCAAGCGAGTTCAGTCTTGAAAACTTGTTCGA 1020
Query 1121 GAAGCAAGCGCAACTTGTGAAGAAAGAAACGCGGTTTACTTCTCAACGATCTGCGAGTGA 1180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1021 GAAGCAAGCGCAACTTGTGAAGAAAGAAACGCGGTTTACTTCTCAAAGATCTGCGAGTGA 1080
Query 1181 AATAATGTCGAAAATGGAAGAAACCGCAAAGCCATTAGGCTTT-AATGTCCGTAAAGACA 1239
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1081 AATAATGTCGAAAATGGAAGAAACCGCAAAGCCATTAGG-TTTCAATGTCCGTAAAGACA 1139
Query 1240 ACTACAAGATAAAAATGAAAGGAGACAAAAGTGGTCGTAAAGGTCAGCTCTCCGTAGCTA 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ACTACAAGATAAAAATGAAAGGAGACAAAAGTGGTCGTAAAGGTCAGCTCTCCGTAGCTA 1199
Query 1300 CAGAGGTGTTTGAAGTGGCGCCATCATTGCATGTGGTAGAGCTTAGGAAAACCGGTGGTG 1359
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1200 CAGAGGTGTTTGAAGTGGCGCCATCGTTGCATGTGGTAGAGCTTAGGAAAACCGGCGGTG 1259
Query 1360 ATACCCTCGAGTTTCACAAGGTATGTGATTCGTTCTACAAAAACTTCTCATCTGGATTAA 1419
|||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||
Sbjct 1260 ATACCCTCGAGTTTCACAAGGTATTTGATCCGTTCTACAAAACCTTCTCATCTGGATTAA 1319
Query 1420 AGGATGTAGTCTGGAATACTGATGCAGCCGCTGAAGAACAAAAGCAATAAGAAATAACAA 1479
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1320 AGGATGTAGTCTGGAATACTGATGCAGCCGCTGAAGAACAAAAGCAATAAAAAATAGCAA 1379
Query 1480 GTTGTTCAATTCAAAGTTTTTAATCAATGTTGAACATGTATAATGAATAGTAAACA-TTC 1538
|||||||||||||||||||||||| || |||||||||||||||||||||||||| | |||
Sbjct 1380 GTTGTTCAATTCAAAGTTTTTAATTAAAGTTGAACATGTATAATGAATAGTAAAAAATTC 1439
Query 1539 TG-GAGTTGGCAATATACAAGTATT 1562
|| |||||||||| ||| || ||||
Sbjct 1440 TGAGAGTTGGCAAAATAGAATTATT 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63763070130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5