BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01150.1
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918855 jgi|Araly1|918855|scaffold_100136.1 839 0.0
> Ahg918855 jgi|Araly1|918855|scaffold_100136.1
Length=924
Score = 839 bits (454), Expect = 0.0
Identities = 732/861 (85%), Gaps = 40/861 (5%)
Strand=Plus/Plus
Query 152 TCTCCCGCTTGATGAAGATGATATCGCTCTCCTCAAGAGTCCTTATATAGGTGAAATTGT 211
||| ||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 67 TCTGCCGGTTGATGAAGATCATATCGCTCTCCTCAAGAGTCCTTATCTAGGTGAAATTGT 126
Query 212 TGAAGAAATTGGCTTTGTGAGAGAAAAGCGCATTGCTCATTGTATTGTTCAGTGTGATGA 271
|||||||||| ||| |||||| | | | | ||||| | || ||||||||||||
Sbjct 127 TGAAGAAATTAGCTCTGTGAGCG---A--G-A-AGCTCA----A-TGCTCAGTGTGATGA 174
Query 272 TGGTGGTGATGAGGACGTCAACTCTGCTCCAAACATTTTC-ACTTATGATAATGTGCCTC 330
||||||| | | ||||||||||||||||||||||||||| | || |||| |||||||||
Sbjct 175 TGGTGGT-A-G-TGACGTCAACTCTGCTCCAAACATTTTCTA-TTTTGATCATGTGCCTC 230
Query 331 TTAAGAAGCGCCACTACCTTGGGACAAGTGACACTTTCAGAAGCTTTGAGCCGTTGAACG 390
||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 231 CTAAGAAGCGCCGCTACCTTGGGACAAGTGACACTTGGAGAAGTTTTGAGCCGTTGAACG 290
Query 391 AACACGCATGTATTGTATGCGATATTGCAGACGATGGTGTAGTACCTTGTTCTGGGAATG 450
|| |||| ||| | |||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct 291 AAGACGCGTGTGTCGTATGCGATATTACAGACGATAGTGTAGCGCCTTGTTCTGGGAATG 350
Query 451 AATGCCCTCTCGCTGTTCACAGGAAGTGTGTTGAGCTTGATTGTGAAGATCCTGCAACCT 510
| || ||| || ||||||||||| |||||| ||||||||||||||||||| |||||||||
Sbjct 351 ACTGTCCTATCTCTGTTCACAGGGAGTGTGCTGAGCTTGATTGTGAAGATTCTGCAACCT 410
Query 511 TTTACTGTCCCTATTGTTGGTTTAAGGAGCAAGCTACTAGATCCACGGCTTTGAGAACAA 570
||| |||||||||||||||||||| || |||| |||||||||||| | |||||||| |
Sbjct 411 CTTATTGTCCCTATTGTTGGTTTAAAGATAAAGCGACTAGATCCACGACATTGAGAAC-A 469
Query 571 G-GGGTGTTGCAGCTGCGAAGACCCTTGTTCAATATGGATGTAGTGAGCTGAGGAGTGGA 629
| ||||||||||||||||||||| |||| ||||||| |||||| | |||| | |||||||
Sbjct 470 GTGGGTGTTGCAGCTGCGAAGACACTTGATCAATATAGATGTACTAAGCTTAAGAGTGGA 529
Query 630 GATATAGTCATGACGAGAGAAAACAGTCAACTAGAGAATGGTTCTGATAATTCACTAC-C 688
||||||| |||| |||||||||| | |||||||||||||| | |||||||||||| | |
Sbjct 530 GATATAGCCATGGCGAGAGAAAATAATCAACTAGAGAATGATAATGATAATTCACT-CTC 588
Query 689 AATGCAACTACATGAGAACCTTCATCAATTACAAGAACTGGTCAAGCACCTTAAGGCTCG 748
||||||| ||||||| |||||||||||||| | ||| | ||| ||| ||||||||||
Sbjct 589 AATGCAATTACATGAAAACCTTCATCAATTGCGGGAAGTTGTCGGGCAACTTAAGGCTCA 648
Query 749 AAATTCCCAGTTAGACGAGTCAACAGATCAATTCATTGATATGGAGAAATCTTGCGGAGA 808
||||| || ||| ||| | ||| | | |||| |||||||| ||||||||||
Sbjct 649 AAATTTCCGGTTTGAC--G-----AGA-C-A---ATTG---TGGAGAAAGCTTGCGGAGA 693
Query 809 AGCTTATGCTGTTGTTAATGATCAGCCAAAAAGGGTAC-TATGGACAGTCAACGAAGAGA 867
||||| || || ||| ||||||||| |||||||| | ||||||||| ||| |||||||
Sbjct 694 AGCTTGTGTTGACGTTGATGATCAGCGGAAAAGGGT-CTTATGGACAGCCAAGGAAGAGA 752
Query 868 AGATGTTGAGGGAGGGAGTGGAGAAATTTTCTGATACAATCAACAAAAACATGCCTTGGA 927
| |||||||||| ||||||||||| |||| | | ||||||||| |||||||| |||||||
Sbjct 753 ACATGTTGAGGGTGGGAGTGGAGATATTTGCAGCTACAATCAATAAAAACATACCTTGGA 812
Query 928 AGAAGATTTTGGAGATGGGAAAAGGTATATTCCACACA-ACTCGTAATTCCTCCGATCTT 986
|||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 813 AGAAGATTTTGGAGATGGGAAAAGGTATATTCCACA-AGACTCGTAATTCCTCAGATCTT 871
Query 987 AAGGACAAATGGAGAAATATG 1007
|||||||| |||||||| |||
Sbjct 872 AAGGACAAGTGGAGAAACATG 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43955723301
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5