BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01160.2
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918854 jgi|Araly1|918854|scaffold_100135.1 833 0.0
> Ahg918854 jgi|Araly1|918854|scaffold_100135.1
Length=754
Score = 833 bits (451), Expect = 0.0
Identities = 602/668 (90%), Gaps = 38/668 (6%)
Strand=Plus/Plus
Query 416 TACCTTGATGAGAACAAGAAGCTGATTATGGCCATCATGGAAAACCAGAATCTCGGTAAA 475
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 104 TACCTTGATGAGAACAAGAAGCTGATAATGGCCATCATGGAAAACCAGAATCTCGGAAAA 163
Query 476 CTTGCTGAGTGCGCCCAGTACCAAGCTCTTCTCCAGAAGAACTTGATGTATCTTGCTGCA 535
||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 CTTGCAGAATGTGCCCAGTACCAAGCTCTTCTCCAGAAGAACTTGATGTATCTTGCTGCA 223
Query 536 ATTGCTGATGCTCAACCCCCACCACCTACGCCAGGACCTTCACCATCTACAGCTGTCGCT 595
||||||||||||||||||||||||||||| | |||| || |||||||| ||||| | |||
Sbjct 224 ATTGCTGATGCTCAACCCCCACCACCTACACAAGGAGCTGCACCATCTCCAGCTATGGCT 283
Query 596 GCCCAGATGGCAACACCGCATTCTGGGATGCAACCACCTAGCTACTTCATGCAACACCCA 655
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 284 TCCCAGATGACAACACCGCATCCTGGGATGCAACCACCTAGCTACTTCATGCAACACCCA 343
Query 656 CAAGCATC----------C--C---C-T-----GCAGGGATTTTCGCTCCAAGGGGTCCT 694
||||| || | | | | |||||| ||||| ||||| | ||||||
Sbjct 344 CAAGCTTCAGGAATGGGTCAACAAGCATCACCCGCAGGGCTTTTCCCTCCACGAGGTCCT 403
Query 695 TTACAGTTTGGTAGCCCACTCCAGTTTCAGGATCCGCAACAGCAGCAGCAGATACATCAG 754
||||||||||||||||||| |||| ||||||||||||||||||||||| | ||||||||
Sbjct 404 TTACAGTTTGGTAGCCCACACCAGCTTCAGGATCCGCAACAGCAGCAG-A--TACATCAG 460
Query 755 CAAGCTATGCAAGGACACATGGGGATTAGACCAATGGGTATGACCAACAACGGGATGCAG 814
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 461 CAAGCTATGCAAGGACACATGGGGATTAGACCAATGGGTATGAACAACAACGGGATGCAG 520
Query 815 CATGCGATGCAACAACCAGAAACCGGTCTTGGAGGAAACGTGGGGCTTAGAGGAGGAAAG 874
|||||||||||| |||||||||||||||||||||| |||| || | ||| |||
Sbjct 521 CATGCGATGCAAGAACCAGAAACCGGTCTTGGAGGGAACG--------AG-G-AGGCAAG 570
Query 875 CAAGATGGAGCAGATGGACAAGGAAAAGATGATGGCAAGTGAAAAGGATCCAAAGAAGCT 934
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 571 CAAGATGGAGCAGATGGACAAGGAAAAGATGATGGCAAGTGAAA-GGATCCAAAGAAGCT 629
Query 935 TTGTTTTGTTGATATTTAGGACTTGTGAGTCTCGTAAGGGCTTTTTGCAATAGCTTGTTT 994
|||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||
Sbjct 630 TTGTTTTGTTGATATTTAGGACTTCTGAGTCTCGTAAGGG-TTTT-GCAATAGCTTATTT 687
Query 995 GAGTTTTTTAACAGAAGATAGACTGTGGAGTAGTTCCGCAAACCGTGTTGTAATGTATTG 1054
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 GAGTTTTT-AACAGAAGATAGACTGTGGAGTAGTTCCGCAAACCGTGTTGTAATGTATTG 746
Query 1055 TTATTTAG 1062
||||||||
Sbjct 747 TTATTTAG 754
Score = 135 bits (73), Expect = 5e-31
Identities = 77/79 (97%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 235 GCAGCAGTCTCCGCAAATGTTTCCGATGGTTCCGTCGATTCCCCCTGCTAACAACATCAC 294
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 25 GCAGCAGTCTCCGCAAATGTTTCCGATGGTTCCTTCGATTCCCCCTACTAACAACATCAC 84
Query 295 TACCGAACAGATCCAAAAG 313
|||||||||||||||||||
Sbjct 85 TACCGAACAGATCCAAAAG 103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42087700368
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5