BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G01170.1

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg311317 jgi|Araly1|311317|fgenesh1_pm.C_scaffold_1000097           230    1e-59
  Ahg918854 jgi|Araly1|918854|scaffold_100135.1                        158    5e-38


> Ahg311317 jgi|Araly1|311317|fgenesh1_pm.C_scaffold_1000097
Length=300

 Score =  230 bits (124),  Expect = 1e-59
 Identities = 140/148 (95%), Gaps = 0/148 (0%)
 Strand=Plus/Plus

Query  194  AGGGACTACTCCAGGAACTGTCTCTAACAAAGAATGGTGGGCAGCAACGGATGAGAAATT  253
            |||||||||||||||||| ||||||||||||||||||||||| || || |||||||||||
Sbjct  153  AGGGACTACTCCAGGAACCGTCTCTAACAAAGAATGGTGGGCGGCCACCGATGAGAAATT  212

Query  254  CCAAGCATGGCCAAGAACCGCTGGTCCTCCCGTTGTTATGAATCCCATTAGCCGTCAGAA  313
             |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  213  TCAAGCATGGCCAAGAACCGCTGGTCCTCCCGTCGTTATGAATCCCATTAGCCGTCAGAA  272

Query  314  TTTCATCGTCAAGACTCGTCCGGAATGA  341
            ||||||||| ||||| ||||||||||||
Sbjct  273  TTTCATCGTGAAGACGCGTCCGGAATGA  300


 Score =  176 bits (95),  Expect = 1e-43
 Identities = 101/104 (97%), Gaps = 0/104 (0%)
 Strand=Plus/Plus

Query  93   GCATCAGGAGGTAAAGCCAAGTACATAATCGGTGCTCTCATCGGTTCTTTCGGAATCTCA  152
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  10   GCATCAGGAGGTAAAGCCAAGTACATAATCGGTGCTCTCATTGGTTCTTTCGGAATCTCA  69

Query  153  TACATCTTCGACAAAGTTATCTCTGATAATAAGATCTTTGGAGG  196
            ||| |||||||||||||||||||||||||||||||||| |||||
Sbjct  70   TACCTCTTCGACAAAGTTATCTCTGATAATAAGATCTTCGGAGG  113


> Ahg918854 jgi|Araly1|918854|scaffold_100135.1
Length=754

 Score =  158 bits (85),  Expect = 5e-38
 Identities = 95/99 (96%), Gaps = 3/99 (3%)
 Strand=Plus/Minus

Query  417  CTAAATAACAATACATTACAACACGGTTTGCGGAACTACTCCACAGTCTATCTTCTGTTA  476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  754  CTAAATAACAATACATTACAACACGGTTTGCGGAACTACTCCACAGTCTATCTTCTGTTA  695

Query  477  AAAAACTCAAACAAGCTATTGCAAAAAGCCCTTACGAGA  515
            |||| |||||| ||||||||||||||  |||||||||||
Sbjct  694  AAAA-CTCAAATAAGCTATTGCAAAA--CCCTTACGAGA  659



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18734394199


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5