BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01180.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909860 jgi|Araly1|909860|Al_scaffold_0001_114 1365 0.0
> Ahg909860 jgi|Araly1|909860|Al_scaffold_0001_114
Length=948
Score = 1365 bits (739), Expect = 0.0
Identities = 864/924 (94%), Gaps = 9/924 (1%)
Strand=Plus/Plus
Query 51 ATGAAGGAGGATCGTCGTCTTCCTCACAAACGCGACGCCTTCCAATTCTTGAAAACCAAG 110
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGAAGGAGGATTGTCGTCTTCCTCACAAACGCGATGCCTTCCAATTCTTGAAAACCAAG 60
Query 111 GCTGCGTACGTTATCGTCATAGTTCTAACCTACGCCTTTGGTTACTTCTCCGCCTACCAC 170
|||| ||||||||| |||||||||||||||||||||| |||||||||||||||| | ||
Sbjct 61 ACTGCTTACGTTATCTTCATAGTTCTAACCTACGCCTTCGGTTACTTCTCCGCCTTCTAC 120
Query 171 TATCATCAACCGCTGCAGCAGCAGCTGCCACCGTCTACGACAGC------CG-TG-GAA- 221
| || |||||||||||||||||||| |||||||||| || | || | || |||
Sbjct 121 TCTCGTCAACCGCTGCAGCAGCAGCAGCCACCGTCTCCGGCGGCGGTGAGAGATGTGAAG 180
Query 222 ACGACAAAACCTCAAGTTTGTTCAATCGACAACTTCCGAGTTACGACTCCATGCGGCAAT 281
|||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 181 ACGATAAAACCTCAAGTTTGTTCAATCGACAACTTCCGAGTAACGACTCGATGCGGCAAT 240
Query 282 CTTGTTCCGCCGGAATTGATTCGCCAGACTGTTATTGACCGGATCTTTAACGGAACTTCT 341
||||| |||||||||||||||||||| || ||||| |||||||||| |||||||||||||
Sbjct 241 CTTGTCCCGCCGGAATTGATTCGCCAAACGGTTATCGACCGGATCTATAACGGAACTTCT 300
Query 342 CCGTACATCGATTTCCCACCACCGCACGCCAAGAAGTTTCTCCGGCCAAAAAGAATCAAA 401
||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 301 CCGTACACCGATTTCCCACCACCACACGCCGAGAAGTTTCTCCGGCCAAAAAGAATCAAA 360
Query 402 GGTTGGGGATCATACGGGGCCGTTTTCGAGAATCTAATCCGCCGAGTCAAACCTAAGACG 461
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGCTGGGGATCGTACGGAGCCGTTTTCGAGAATCTAATCCGCCGAGTCAAACCTAAGACG 420
Query 462 ATCGTCGAAGTCGGGAGTTTTCTCGGCGCGTCGGCGATACACATGGCGAATCTCACGCGC 521
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATCGTCGAAATCGGGAGTTTCCTCGGCGCGTCGGCGATACACATGGCGAATCTCACGCGC 480
Query 522 CGACTTGGGCTCGAGGAGACTCAGATTCTATGCGTCGACGACTTCCGTGGCTGGCCCGGT 581
|| |||||||| ||||| ||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 481 CGCCTTGGGCTAGAGGATACTCAGATTCTCTGCGTCGACGATTTCCGTGGCTGGCCTGGT 540
Query 582 TTTCGAGACCGGTTTAAGGACATGGCTTTGGTTAACGGTGACGTTCTGCTTATGTACCAG 641
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 541 TTTCGAGACCGGTTTAAGGACATGGCTTTGGTTAACGGTGACGTTTTGCTTATGTACCAG 600
Query 642 TTTATGCAAAACGTGGTTATCTCGGATTTTTCCGGTTCGATATTGCCGGTTCCTTTCTCG 701
||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||
Sbjct 601 TTTATGCAAAACGTGGTTAGCTCGAATTTTTCCGGTTCGATTTTGCCGGTTCCTTTCTCG 660
Query 702 ACCGGTTCGGCTTTGGAGAAGCTGTGTGAGTGGGGAGTGACGGCGGACCTGGTGGAGATA 761
|||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 661 ACCGGTTCCGCTTTGGAGAAGCTGTGTGAGTGGGGAGTGAAGGCGGATCTGGTGGAGATA 720
Query 762 GACGCGGGTCACGATTTTAATTCGGCATGGGCGGATATAAACCGGGCGGTTCGGATACTC 821
||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 721 GACGCGGGTCACGATTTCAATTCGGCTTGGGCGGATATAAACCGGGCGGTTAGGATACTC 780
Query 822 CGACCCGGCGGTGTTATATTTGGTCACGATTATTTCACGGCGGCGGATAATAGAGGAGTG 881
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 CGACCCGGCGGAGTTATATTCGGTCACGATTATTTCACGGCGGCGGATAATAGAGGAGTG 840
Query 882 AGGAGAGCCGTGAATCTGTTCGCAGAGATTAACCGGTTAAAGGTCAAAACCGATGGTCAA 941
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 841 AGGAGAGCCGTGAATCTGTTCGCAGAGATTAACCGGTTAAAAGTCAAAACCGATGGTCAA 900
Query 942 CATTGGGTTATTGATTCGGTCAAA 965
||||||||||||||||| ||||||
Sbjct 901 CATTGGGTTATTGATTCCGTCAAA 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5