BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01190.1
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311315 jgi|Araly1|311315|fgenesh1_pm.C_scaffold_1000095 2453 0.0
Ahg471531 jgi|Araly1|471531|fgenesh2_kg.1__1485__AT1G13710.1 80.5 3e-14
> Ahg311315 jgi|Araly1|311315|fgenesh1_pm.C_scaffold_1000095
Length=1620
Score = 2453 bits (1328), Expect = 0.0
Identities = 1512/1602 (94%), Gaps = 7/1602 (0%)
Strand=Plus/Plus
Query 1 ATGAGAACCGAAATAGAAAGTTTGTGGGTATTTGCTCTTGCATCAAAATTCAATATTTAC 60
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 16 ATGAGAACCGAAATAGAAAATTTGTGGGTATTTGCTCTTGCATCAAAATTCAATATTTTC 75
Query 61 ATGCAACAACATTTTGCTTCCCTTC-TCGTCGCCATTGCTATCACTTGGTTTACCATAAC 119
|||||| |||||||||||||||||| || ||||||| ||||||||||||| |||| ||||
Sbjct 76 ATGCAAGAACATTTTGCTTCCCTTCTTC-TCGCCATAGCTATCACTTGGTGTACCTTAAC 134
Query 120 CATCGTATTTTGGTCTACTCCGGGTGGACCGGCTTGGGGAAAATACTTCTTCACTCGCCG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 CATCGTATTTTGGTCTACTCCGGGTGGACCGGCTTGGGGAAAATACTTCTTCACTCGCCG 194
Query 180 GTTTATTTCTCTCGATTACAACCGAAAATACAAGAATCTCATTCCCGGTCCTAGAGGGTT 239
||||| |||||||| | | |||||||||| |||||||||||||||||||||| |||||||
Sbjct 195 GTTTAGTTCTCTCGGTCATAACCGAAAATCCAAGAATCTCATTCCCGGTCCTCGAGGGTT 254
Query 240 TCCACTTGTGGGAAGCATGAGCCTTAGGTCAAGCCACGTGGCTCATCAGCGCATAGCGTC 299
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 255 TCCACTTGTTGGAAGCATGAGCCTCAGGTCAAGCCACGTGGCTCATCAGCGCATAGCGTC 314
Query 300 TGTGGCTGAGATGAGTAACGCCAAGCGGCTCATGGCGTTTAGCCTCGGTGATACTAAGGT 359
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 315 AGTGGCCGAGATGAGTAACGCCAAGCGGCTCATGGCGTTTAGCCTCGGCGATACTAAGGT 374
Query 360 GGTGGTGACGTGTCATCCTGCCGTGGC-AAAGGAGATACTAAACAGTTCGGTTTTTGCTG 418
|||||||||||||||||||| |||||| |||| | |||||||||||||| |||||||| |
Sbjct 375 GGTGGTGACGTGTCATCCTGACGTGGCGAAAGAA-ATACTAAACAGTTCCGTTTTTGCAG 433
Query 419 ACCGACCGGTTGACGAAACCGCTTACGGTTTGATGTTTAACCGAGCCATGGGATTTGCTC 478
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 434 ACCGGCCGGTTGACGAAACCGCTTACGGTTTGATGTTTAATCGAGCCATGGGATTTGCTC 493
Query 479 CCAATGGTACTTATTGGCGTACGCTGCGTCGGTTAGGCTCGAACCATCTTTTTAACCCGA 538
||||||||||||| |||||||| |||||||||||| |||||||||||||||| ||||| |
Sbjct 494 CCAATGGTACTTACTGGCGTACACTGCGTCGGTTAAGCTCGAACCATCTTTTCAACCCAA 553
Query 539 AGCAAATCAAACAATCGGAGGATCAGAGACGGGTGATAGCGACTCAGATGGTGAATGCGT 598
|||||||||||| |||||||| |||||| | ||||| |||||||||||||| |||||||
Sbjct 554 AGCAAATCAAACGCTCGGAGGAGCAGAGAAGAGTGATCGCGACTCAGATGGTTAATGCGT 613
Query 599 TTGCACGTAACCCTAAATCCGCGTGTGCAGTGCGTGATTTGCTCAAAACAGCGTCGTTGT 658
||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 614 TTGCACGCAACGCTAAATCTGCGTTTGCAGTGCGTGATTTGCTCAAAACAGCGTCGTTGT 673
Query 659 GTAACATGATGGGTTTGGTTTTCGGGAGAGAGTATGAATTGGAGTCAAATAACAACTTGG 718
||||||||||||| | |||||| |||||||| |||||||||||||||||||||||| |||
Sbjct 674 GTAACATGATGGGATCGGTTTTTGGGAGAGAATATGAATTGGAGTCAAATAACAACGTGG 733
Query 719 AATCTGAATGCTTAAAGGGTTTGGTTGAAGAAGGGTACGATCTTCTAGGTACGTTAAATT 778
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 734 AATCGGAATGCTTAAAGGGTTTGGTTGAAGAAGGGTACGATCTTCTCGGTACGTTAAATT 793
Query 779 GGACCGACCATCTTCCTTGGTTAGCCGGTTTAGATTTCCAACAAATCCGGTTTAGGTGCT 838
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 GGACCGACCATCTCCCTTGGTTAGCCGGTTTAGATTTCCAACAAATCCGGTTTAGGTGCT 853
Query 839 CGCAGCTCGTACCGAAAGTAAATCTGTTATTGAGCCGTATCATACATGAACAACGTGCTG 898
| ||||||||||||||||||||||||||| ||||||||||||| |||||||| | | ||
Sbjct 854 CCCAGCTCGTACCGAAAGTAAATCTGTTACTGAGCCGTATCATTCATGAACA-C-TA-TG 910
Query 899 CCACGGGTAACTTTCTTGACATGTTACTTTCTCTTCAAGGTTCAGAAAAATTATCAGAAT 958
|||| ||||||||||||||| || ||||||| |||||| ||||||||||||||||||| |
Sbjct 911 CCACCGGTAACTTTCTTGACGTGCTACTTTCACTTCAACGTTCAGAAAAATTATCAGATT 970
Query 959 CCGACATGGTTGCTGTTCTTTGGGAAATGATATTTAGGGGAACGGACACTGTTGCGGTTT 1018
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 CAGACATAGTTGCTGTTCTTTGGGAAATGATATTTAGGGGAACGGACACTGTTGCGGTTT 1030
Query 1019 TGGTCGAGTGGGTGCTAGCGAGGATTGTGATGCATCCCAAAGTTCAATTAACGGTCCACG 1078
|| |||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1031 TGATCGAGTGGGTCCTAGCGAGGATTGTGATGCATCCTAAAGTTCAATCAACGGTCCACG 1090
Query 1079 ATGAGCTTGACCGAGTCGTTGGCAGATCAAGAACCGTGGATGAGTCAGACCTTCCATCAC 1138
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1091 ATGAGCTTGACCGAGTCGTTGGCAGATCAAGAACCGTCGATGAGTCAGACCTTCCATCGC 1150
Query 1139 TCACGTATCTAACGGCTATGATCAAAGAAGTGTTGAGGCTGCATCCACCAGGTCCACTGC 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1151 TCACGTATCTAACGGCTATGATCAAAGAAGTGTTGAGGCTGCATCCACCAGGCCCACTTC 1210
Query 1199 TTTCTTGGGCACGACTGTCTATAACAGACACTTCCGTAGATGGATATCACGTGCCGGCTG 1258
||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1211 TTTCTTGGGCACGCCTCTCTATAACAGACACCACCGTAGACGGATATCACGTGCCGGCTG 1270
Query 1259 GGACCACCGCGATGGTCAACATGTGGGCTATAGCACGTGACCCACACGTGTGGGAGGATC 1318
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1271 GGACCACCGCGATGGTCAACATGTGGGCTATAGCACGTGACCCGCACGTGTGGGAGGATC 1330
Query 1319 CTTTAGAGTTTAAGCCTGAGAGGTTCGTGGCTAAAGAGGGTGAAGCTGAGTTCTCTGTTT 1378
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1331 CTTTAGAGTTTAAGCCTGAGAGGTTCGTGGCTAAAGATGGTGAAGCTGAGTTCTCTGTTT 1390
Query 1379 TCGGGTCGGATCTGAGGTTGGCACCGTTCGGGTCGGGTAAGAGGGTTTGCCCTGGAAAGA 1438
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1391 TCGGGTCGGATCTGAGGTTGGCACCGTTCGGGTCCGGTAAGAGGGTTTGCCCTGGAAAGA 1450
Query 1439 ATTTGGGACTTACAACGGTGTCGTTTTGGGTTGCAACGCTCTTGCATGAGTTTGAGTGGC 1498
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 ATTTGGGGCTTACGACGGTGTCGTTTTGGGTTGCAACGCTCTTGCATGAGTTTGAGTGGC 1510
Query 1499 TTCCTAGCGTCGAAGCTAACCCTCCAGATCTCTCGGAGGTTTTGAGGCTCTCGTGTGAGA 1558
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1511 TTCCAAGCGTCGAAGCAAACCCTCCAGATCTCTCGGAGGTTTTGAGGCTCTCGTGCGAGA 1570
Query 1559 TGGCTTGTCCACTCATCGTTAACGTAAGCTCAAGGCGTAAGA 1600
|||||||||| || ||||||||||||||| ||||||||||||
Sbjct 1571 TGGCTTGTCCTCTTATCGTTAACGTAAGCCCAAGGCGTAAGA 1612
> Ahg471531 jgi|Araly1|471531|fgenesh2_kg.1__1485__AT1G13710.1
Length=1792
Score = 80.5 bits (43), Expect = 3e-14
Identities = 78/95 (82%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 961 GACATGGTTGCTGTTCTTTGGGAAATGATATTTAG-GGGAACGGACACTGTTGCGGTTTT 1019
|||||| |||||||||||||||||||||||||||| |||| | || || |||||| || |
Sbjct 948 GACATGATTGCTGTTCTTTGGGAAATGATATTTAGAGGGA-CAGATACAGTTGCGATTCT 1006
Query 1020 GGTCGAGTGGGTGCTAGCGAGGATTGTGATGCATC 1054
|| || |||||||| || || || || ||||||
Sbjct 1007 AGTGGAATGGGTGCTTGCAAGAATGGTTTTGCATC 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5