BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01200.1
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470156 jgi|Araly1|470156|fgenesh2_kg.1__110__AT1G01200.1 1182 0.0
Ahg325580 jgi|Araly1|325580|fgenesh1_pm.C_scaffold_6000800 122 3e-27
> Ahg470156 jgi|Araly1|470156|fgenesh2_kg.1__110__AT1G01200.1
Length=949
Score = 1182 bits (640), Expect = 0.0
Identities = 747/796 (94%), Gaps = 17/796 (2%)
Strand=Plus/Plus
Query 1 TTTCACTCACTCCCACTTTACTCAAAAGAGACT--TAAACTTTATAGTTGTTTTCTTCAT 58
||||||| ||||||||||||||||||||||||| |||| || ||| ||||||||||||
Sbjct 1 TTTCACTAACTCCCACTTTACTCAAAAGAGACTCAAAAAC-TT-TAG-TGTTTTCTTCAT 57
Query 59 CAG--C------GCAATAATGAACGAAGAGATGAGCGGTGAGTCGCCGGAGAATAACAAA 110
||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CAGCCCAATAAGGCAATAATGAACGAAGAGATGAGCGGTGAGTCGCCGGAGAATAACAAA 117
Query 111 CACGTAAAGAAACCGACGATGCCGGAAAAGATCGATTACGTGTTCAAGGTGGTGGTCATT 170
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 118 CACGTAAAGAAACCGACGATGCCGGAAAAGATCGATTACGTGTTCAAGGTGGTTGTCATT 177
Query 171 GGAGATTCTGCTGTCGGGAAAACGCAGCTCCTCTCACGTTTTACACACAACGAGTTCTGT 230
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 178 GGAGATTCTGCTGTTGGGAAAACGCAGCTCCTCTCACGTTTTACACAGAACGAGTTCTGT 237
Query 231 TATGATTCAAAATCAACCATTGGTGTCGAGTTTCAGACACGGACCATCACTCTTCGGGGC 290
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||
Sbjct 238 TATGATTCAAAATCAACCATTGGTGTTGAGTTTCAGACAAGGACCATCACTCTTCAGGGC 297
Query 291 AAACTCGTCAAAGCTCAGATCTGGGACACCGCCGGTCAAGAGAGATACAGAGCGGTGACT 350
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 298 AAACTCGTCAAAGCTCAGATCTGGGACACCGCCGGTCAAGAAAGATACAGAGCCGTGACG 357
Query 351 AGCGCCTACTACAGAGGTGCGTTAGGTGCGATGGTGGTTTACGACATTACCAAACGCCTC 410
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 358 AGCGCCTATTACAGAGGTGCGTTAGGTGCGATGGTGGTTTACGACATTACCAAACGCGTC 417
Query 411 TCATTCGACCACGTTGCACGTTGGGTCGAGGAATTACGTGCTCACGCCGATGATTCCGCC 470
|| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 418 TCGTTCGACCACGTGGCACGTTGGGTTGAGGAATTACGTGCTCACGCCGACGATTCCGCC 477
Query 471 GTGATCATGCTCGTCGGAAACAAAGCCGATCTCTCCGTTGGTAAACGTGCCGTTCCTACG 530
|||||||||||||| |||||||||||||||||| |||||| |||||| ||||||||||||
Sbjct 478 GTGATCATGCTCGTAGGAAACAAAGCCGATCTCGCCGTTGATAAACGCGCCGTTCCTACG 537
Query 531 GAGGATGCAGTCGAATTCGCCGAGACTCAACGGCtttttttCTCGGAAGTCTCGGC-TCT 589
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 538 GAGGACGCCGTCGAATTCGCTGAGACTCAACGGCTTTTTTTCTCGGAAGTCTCGGCAT-T 596
Query 590 AAGCGGCGGAAACGTCGACGAAGCTTTTTTCCGTTTACTCGAGGAGATTTTCAGCCGCGT 649
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AAGTGGCGGAAACGTCGACGAAGCTTTTTTCCGTTTACTCGAGGAGATTTTCAGCCGCGT 656
Query 650 TGTTGTTTCGAGAAAAGCTATGGAATCCGACGGTGGAGCCACCGTGAAACTTGACGGTTC 709
|||||||||||||||||||| |||||| ||||| |||||||||||||| |||||||||||
Sbjct 657 TGTTGTTTCGAGAAAAGCTACGGAATCTGACGGCGGAGCCACCGTGAAGCTTGACGGTTC 716
Query 710 GAGAATTGATGTCATCTCTGGTTCGGATCTTGAGA-CTAGTAATATCAAGGAACAAGCTT 768
||| |||||||| |||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 717 GAGGATTGATGTGATCTCTGGTTCGGATCTTGAGATC-AGTAAGATCAAGGAACAAGCTT 775
Query 769 CGTGCTCGTGTTGAAA 784
||||||||||||||||
Sbjct 776 CGTGCTCGTGTTGAAA 791
Score = 148 bits (80), Expect = 6e-35
Identities = 145/172 (84%), Gaps = 22/172 (13%)
Strand=Plus/Plus
Query 809 AAAAGCCAATTATTGGGCCTTTCTTTAAGCCCATATATGACTC-GGATCTTTGTTTGGGT 867
||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||| ||
Sbjct 790 AAAAGCCAATTATTGGGCC-TTCTTTAAGCCCACATATGACTCAGGATCTTTGTTT-GGC 847
Query 868 TTTTCATGTTTAGAGAATTA-GAGGTGGTGCTTATA---G-TAA----AATCAAAAAGCT 918
|||||| | |||| | ||||||||||||| | ||| |||||||||||
Sbjct 848 TTTTCA----T-----ATTACG-GGTGGTGCTTATAGTTGCTAATTGCTATCAAAAAGCT 897
Query 919 ATTCATGTGTCACTCGTAATCTCTTTGACATTCTTGTATATGTAAAGAAAAA 970
|||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 898 ATTCATGTGTCATTCGTAATCTCTTTGACATTCTTGTATATGTAAAGGAAAA 949
> Ahg325580 jgi|Araly1|325580|fgenesh1_pm.C_scaffold_6000800
Length=681
Score = 122 bits (66), Expect = 3e-27
Identities = 205/269 (76%), Gaps = 22/269 (8%)
Strand=Plus/Plus
Query 138 AAGATCGATTACGTGTTCAAGGTGGTGGTCATTGGAGATTCTGCTGTCGGGAAAACGCAG 197
||||| || ||||| |||||| ||||| | || ||||| |||| ||| || ||| |||||
Sbjct 37 AAGATTGACTACGTCTTCAAGCTGGTGTTGATCGGAGACTCTGGTGTTGGCAAATCGCAG 96
Query 198 CTCCTCTCACGTTTTACAC-A-CAACGAGTTCTG-TTATGATTCAAAATCAACCATTGGT 254
| || || || ||| | | ||||||||| | ||| ||||| ||| | ||||| ||
Sbjct 97 ATACTGTCTCG--GTACGCGAGAAACGAGTTCAGCTTA-GATTCCAAAGCTACCATCGGC 153
Query 255 GTCGAGTTTCAGACACGGACCATCAC-T-CT-TCGGGGC--AA-ACTCGTCAAAGCTCAG 308
||||| ||||| || | || | ||| | | || | | || | | ||||||||||||
Sbjct 154 GTCGAATTTCAAACTC-GA--A-CACTTGTTATC-GACCATAAGAGT-GTCAAAGCTCAG 207
Query 309 ATCTGGGACACCGCCGGTCAAGAGA-GATACAGAGCGGTGACTAGCGCCTACTACAGAGG 367
||||||||||||||||| ||||| | | || ||||||||||| || || || ||||||||
Sbjct 208 ATCTGGGACACCGCCGGCCAAGA-ACGGTATAGAGCGGTGACGAGTGCGTATTACAGAGG 266
Query 368 TGCG-TTAGGTGCGATGGTGGTTTACGAC 395
||| || || |||||| |||||||||||
Sbjct 267 AGCGGTTGGG-GCGATGCTGGTTTACGAC 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36483631569
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5