BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G01210.1

Length=616
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg311313 jgi|Araly1|311313|fgenesh1_pm.C_scaffold_1000093           521    2e-147


> Ahg311313 jgi|Araly1|311313|fgenesh1_pm.C_scaffold_1000093
Length=321

 Score =  521 bits (282),  Expect = 2e-147
 Identities = 308/321 (96%), Gaps = 0/321 (0%)
 Strand=Plus/Plus

Query  80   ATGGAGTTTTGTCCAACATGTGGGAATCTGTTGCGATACGAGGGAGGTGGCAATTCGAGA  139
            |||||||||||||| |||||||||||||||||||| ||||||||| |||| || ||||||
Sbjct  1    ATGGAGTTTTGTCCTACATGTGGGAATCTGTTGCGTTACGAGGGAAGTGGGAACTCGAGA  60

Query  140  TTCTTCTGTTCCACATGTCCATACGTCGCCTACATCCAAAGACAGGTGGAGATAAAGAAG  199
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  61   TTCTTCTGTTCCACATGTCCATACGTCGCCTACATCGAAAGACAGGTGGAGATAAAGAAG  120

Query  200  AAGCAACTTCTGGTTAAGAAATCTATAGAAGCTGTTGTGACTAAAGATGATATACCCACA  259
            ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  121  AAGCAACTTCTAGTTAAGAAATCTATAGAACCTGTTGTGACTAAAGATGATATACCCACA  180

Query  260  GCTGCTGAAACTGAAGCCCCATGTCCAAGGTGTGGCCACGACAAGGCATACTTCAAATCA  319
            || |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct  181  GCCGCTGAAACTGAAGCTCCATGTCCAAGGTGCGGGCACGACAAGGCATACTTCAAATCA  240

Query  320  ATGCAGATTCGTTCAGCAGATGAGCCAGAATCAAGATTTTATAGATGCTTGAAGTGCGAG  379
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ATGCAGATTCGTTCAGCGGATGAGCCAGAATCAAGATTTTATAGATGCTTGAAGTGCGAG  300

Query  380  TTCACTTGGCGTGAGGAATGA  400
            |||||||||||||||||||||
Sbjct  301  TTCACTTGGCGTGAGGAATGA  321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22530643947


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5