BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01225.1
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470154 jgi|Araly1|470154|fgenesh2_kg.1__108__AT1G01225.1 1243 0.0
> Ahg470154 jgi|Araly1|470154|fgenesh2_kg.1__108__AT1G01225.1
Length=853
Score = 1243 bits (673), Expect = 0.0
Identities = 811/872 (93%), Gaps = 31/872 (4%)
Strand=Plus/Plus
Query 1 CTTGTAACGCCGTTTCCTGCATTTTCCACAAGCAAGGTaa-aaaaaaGC-TT-TGTGCag 57
||||||||||||||||||||||||||||||||||||| || |||||||| || |||||||
Sbjct 1 CTTGTAACGCCGTTTCCTGCATTTTCCACAAGCAAGG-AATAAAAAAGCTTTGTGTGCAG 59
Query 58 --agagagag-agaagaag-a-aa-aatgggtttgcttacgaacaagattgagagagaag 111
|||||||| |||||||| | || |||||||||||||||||||||||| ||||||||||
Sbjct 60 AAAGAGAGAGAAGAAGAAGAAGAAGAATGGGTTTGCTTACGAACAAGATGGAGAGAGAAG 119
Query 112 agCTAAAGCCAGGAGATCACATCTATACTTACAGAGCAATCTTCGCTTATTCTCACCACG 171
|| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 120 AGTTAAAGGCAGGAGATCACATCTACACTTACAGAGCAATCTTCGCTTATTCTCACCACG 179
Query 172 GAATCTTTGTCGGTGGGTCCAAAGTTGTTCATTTCAGACCTGAACACAACCCCATGGATT 231
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAATCTTTGTCGGTGGGTCCAAAGTTGTTCATTTCAGACCTGAACACAACCCCATGG--- 236
Query 232 CATCAACATCATCAATATCATCATCTTCCTCTGAAGATATCTGTTCCATATTTCCTGATT 291
| ||||| ||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 237 -----A-GTCATC---ATCGTCATCTTCCTCTGATGATATTTGTTCCATATTTCCTGATT 287
Query 292 GCGGTTTCAGACAACCGGACAGTGGAGTAGTCCTTTCTTGCTTAGACTGTTTCCTCAAGA 351
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 288 GCGGTTTCAGACAACCGGACAGTGGAGTAGTCCTTTCATGTTTAGACTGTTTCCTCAAGA 347
Query 352 ACGGCTCACTCTACTGCTTCGAATATGGAGTCAGTCCATCGGTTTTCCTAACCAAAGTCC 411
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 348 ACGGCTCACTCTACGGCTTCGAATATGGAGTCAGTCCATCGGTTTTCCTAACCAAAATCC 407
Query 412 GCGGAGGGACTTGCACAACCGCGCAATCTGATACAACTGATTCAGTCATCCACAGGGCAA 471
||||||| |||||||||||||||||||||||| |||||||||| || |||||||||||||
Sbjct 408 GCGGAGGCACTTGCACAACCGCGCAATCTGATCCAACTGATTCGGTGATCCACAGGGCAA 467
Query 472 TGTACCTTCTCCAAAACGGATTTGGCAACTACGACATTTTCAAGAACAACTGTGAGGATT 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 468 TGTACCTTCTCCAAAACGGATTTGGCAACTACGACATTTTCAAGAACAACTGTGAAGATT 527
Query 532 TCGCGCTCTATTGCAAGACCGGTTTGCTTATAATGGATAAGCTCGGTG-T--AGGGAGAA 588
||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||
Sbjct 528 TCGCGCTCTATTGCAAGACGGGTTTGCTTATAATGGATAAGCTCGGTGGTGTAGGGAGAA 587
Query 589 GCGGTCAAGCTTCTTCAATTGTTGGTGCTCCTTTGGCTGCACTCCTCTCTTCTCCTTTCA 648
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 588 GCGGTCAAGCTTCTTCAATTGTTGGTGCTCCTTTGGCTGCACTTCTCTCTTCACCTTTCA 647
Query 649 AATTGCTTATTCCAAGTCCCATTGGTGTGGCAACAGTTACTGCTGGTATGTACTGTATGA 708
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 648 AATTGCTGATTCCAAGTCCCATTGGTGTGGCAACTGTTACTGCTGGTATGTACTGTATGA 707
Query 709 GTCGCTATGCTACCGATATTGGTGTTAGAAGCGACGTCATTAAGGTCTCAGTTGAGGATT 768
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 708 GTCGTTATGCTACTGATATTGGCGTTAGAAGCGACGTCATTAAGGTCTCAGTTGAAGATT 767
Query 769 TGGCTCTCAACCTTGACGTAAAGACCATTGAGCAAGGTgaagaagaagaagaagacgaag 828
|||||||||||||||| | ||||||||||||||||||||||||||||||||||| | |
Sbjct 768 TGGCTCTCAACCTTGATTTGAAGACCATTGAGCAAGGTGAAGAAGAAGAAGAAGA--A-G 824
Query 829 aagaagaTTCTGATACCGACTATGTTAGGTGA 860
|||| ||| |||||||||||||||||||||
Sbjct 825 AAGA---TTCCGATACCGACTATGTTAGGTGA 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38122917000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5