BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01225.1 Length=1025 Score E Sequences producing significant alignments: (Bits) Value Ahg470154 jgi|Araly1|470154|fgenesh2_kg.1__108__AT1G01225.1 1243 0.0 > Ahg470154 jgi|Araly1|470154|fgenesh2_kg.1__108__AT1G01225.1 Length=853 Score = 1243 bits (673), Expect = 0.0 Identities = 811/872 (93%), Gaps = 31/872 (4%) Strand=Plus/Plus Query 1 CTTGTAACGCCGTTTCCTGCATTTTCCACAAGCAAGGTaa-aaaaaaGC-TT-TGTGCag 57 ||||||||||||||||||||||||||||||||||||| || |||||||| || ||||||| Sbjct 1 CTTGTAACGCCGTTTCCTGCATTTTCCACAAGCAAGG-AATAAAAAAGCTTTGTGTGCAG 59 Query 58 --agagagag-agaagaag-a-aa-aatgggtttgcttacgaacaagattgagagagaag 111 |||||||| |||||||| | || |||||||||||||||||||||||| |||||||||| Sbjct 60 AAAGAGAGAGAAGAAGAAGAAGAAGAATGGGTTTGCTTACGAACAAGATGGAGAGAGAAG 119 Query 112 agCTAAAGCCAGGAGATCACATCTATACTTACAGAGCAATCTTCGCTTATTCTCACCACG 171 || ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 120 AGTTAAAGGCAGGAGATCACATCTACACTTACAGAGCAATCTTCGCTTATTCTCACCACG 179 Query 172 GAATCTTTGTCGGTGGGTCCAAAGTTGTTCATTTCAGACCTGAACACAACCCCATGGATT 231 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GAATCTTTGTCGGTGGGTCCAAAGTTGTTCATTTCAGACCTGAACACAACCCCATGG--- 236 Query 232 CATCAACATCATCAATATCATCATCTTCCTCTGAAGATATCTGTTCCATATTTCCTGATT 291 | ||||| ||| |||||||||||||| ||||| ||||||||||||||||||| Sbjct 237 -----A-GTCATC---ATCGTCATCTTCCTCTGATGATATTTGTTCCATATTTCCTGATT 287 Query 292 GCGGTTTCAGACAACCGGACAGTGGAGTAGTCCTTTCTTGCTTAGACTGTTTCCTCAAGA 351 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 288 GCGGTTTCAGACAACCGGACAGTGGAGTAGTCCTTTCATGTTTAGACTGTTTCCTCAAGA 347 Query 352 ACGGCTCACTCTACTGCTTCGAATATGGAGTCAGTCCATCGGTTTTCCTAACCAAAGTCC 411 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 348 ACGGCTCACTCTACGGCTTCGAATATGGAGTCAGTCCATCGGTTTTCCTAACCAAAATCC 407 Query 412 GCGGAGGGACTTGCACAACCGCGCAATCTGATACAACTGATTCAGTCATCCACAGGGCAA 471 ||||||| |||||||||||||||||||||||| |||||||||| || ||||||||||||| Sbjct 408 GCGGAGGCACTTGCACAACCGCGCAATCTGATCCAACTGATTCGGTGATCCACAGGGCAA 467 Query 472 TGTACCTTCTCCAAAACGGATTTGGCAACTACGACATTTTCAAGAACAACTGTGAGGATT 531 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 468 TGTACCTTCTCCAAAACGGATTTGGCAACTACGACATTTTCAAGAACAACTGTGAAGATT 527 Query 532 TCGCGCTCTATTGCAAGACCGGTTTGCTTATAATGGATAAGCTCGGTG-T--AGGGAGAA 588 ||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||| Sbjct 528 TCGCGCTCTATTGCAAGACGGGTTTGCTTATAATGGATAAGCTCGGTGGTGTAGGGAGAA 587 Query 589 GCGGTCAAGCTTCTTCAATTGTTGGTGCTCCTTTGGCTGCACTCCTCTCTTCTCCTTTCA 648 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 588 GCGGTCAAGCTTCTTCAATTGTTGGTGCTCCTTTGGCTGCACTTCTCTCTTCACCTTTCA 647 Query 649 AATTGCTTATTCCAAGTCCCATTGGTGTGGCAACAGTTACTGCTGGTATGTACTGTATGA 708 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 648 AATTGCTGATTCCAAGTCCCATTGGTGTGGCAACTGTTACTGCTGGTATGTACTGTATGA 707 Query 709 GTCGCTATGCTACCGATATTGGTGTTAGAAGCGACGTCATTAAGGTCTCAGTTGAGGATT 768 |||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 708 GTCGTTATGCTACTGATATTGGCGTTAGAAGCGACGTCATTAAGGTCTCAGTTGAAGATT 767 Query 769 TGGCTCTCAACCTTGACGTAAAGACCATTGAGCAAGGTgaagaagaagaagaagacgaag 828 |||||||||||||||| | ||||||||||||||||||||||||||||||||||| | | Sbjct 768 TGGCTCTCAACCTTGATTTGAAGACCATTGAGCAAGGTGAAGAAGAAGAAGAAGA--A-G 824 Query 829 aagaagaTTCTGATACCGACTATGTTAGGTGA 860 |||| ||| ||||||||||||||||||||| Sbjct 825 AAGA---TTCCGATACCGACTATGTTAGGTGA 853 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38122917000 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5