BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01230.1 Length=832 Score E Sequences producing significant alignments: (Bits) Value Ahg470153 jgi|Araly1|470153|fgenesh2_kg.1__107__AT1G01230.1 1184 0.0 Ahg931892 jgi|Araly1|931892|scaffold_304349.1 89.8 3e-17 > Ahg470153 jgi|Araly1|470153|fgenesh2_kg.1__107__AT1G01230.1 Length=789 Score = 1184 bits (641), Expect = 0.0 Identities = 745/791 (94%), Gaps = 23/791 (3%) Strand=Plus/Plus Query 1 GTCGTCTTTCACGGGCACACAAAATTAAACCAAAGAAACAAACAATCCTTGTTCTCGCCG 60 |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| Sbjct 1 GTCGTCTTTCACGGGCACACAATATTAAACCAAACAAACAAACAATCCTTCTTCTCGCCG 60 Query 61 AAATAGAGAATTTTGTGAATCTGGGTTTTTAGTTCAGGTG-TTAATATAAGATTTTGATC 119 ||| ||||||||||||||||||||||||| | || ||||| ||||| ||||||||||||| Sbjct 61 AAAGAGAGAATTTTGTGAATCTGGGTTTTCAATTTAGGTGTTTAATTTAAGATTTTGATC 120 Query 120 AAAAGAAGACGAGATTCGATCCGATCCGATCTGA-TTG---AAGAAGAAATGGCGAATCT 175 ||||||||||||||||||||||||| ||||| || ||| ||| ||||||||||||||| Sbjct 121 AAAAGAAGACGAGATTCGATCCGAT-CGATCAGATTTGTACAAGGAGAAATGGCGAATCT 179 Query 176 GTATGTGAAAGCGGTTCCACCACCGGATATGAATAGGAATACGGAATGGTTCATGTATCC 235 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GTATGTGAAAGCTGTTCCACCACCGGATATGAATAGGAATACGGAATGGTTCATGTATCC 239 Query 236 AGGAGTTTGGACGACTTACATGCTTATTCTCTTCTTCGGTTGGCTCGTTGTTCTCTCTGT 295 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 240 AGGAGTTTGGACTACTTACATGCTCATTCTCTTCTTCGGTTGGCTCGTTGTTCTCTCTGT 299 Query 296 CTCTGGTTGTTCCCCTGGAATGGCTTGGACTGTTGTTAATCTCGCTCACTTCGTTGTAAC 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CTCTGGTTGTTCCCCTGGAATGGCTTGGACTGTTGTTAATCTCGCTCACTTCGTTGTAAC 359 Query 356 GTATCACAGCTTCCACTGGATGAAAGGAACTCCTTTTGCAGATGACCAAGGAATCTACAA 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GTATCACAGCTTCCACTGGATGAAAGGAACTCCTTTTGCAGATGACCAAGGAATCTACAA 419 Query 416 TGGTTTAACTTGGTGGGAACAAATGGACAATGGTCAACAGCTTACCCGCAACCGCAAATT 475 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 420 TGGTTTAACTTGGTGGGAACAAATGGACAATGGTCAACAACTTACCCGCAACCGCAAATT 479 Query 476 TCTTACCCTAGTTCCTGTTGTTCTGTACTTGATTGCATCGCATACAACAGATTACAGACA 535 ||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 480 TCTTACCGTAGTTCCTGTTGTCCTGTACTTGATAGCATCGCATACAACAGATTACAGACA 539 Query 536 TCCATGGCTGTTCCTCAACACACTCGCTGTGATGGTTCTCGTTGTTGCCAAGTTCCCCAA 595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TCCATGGCTGTTCCTCAACACACTCGCTGTGATGGTTCTCGTTGTTGCCAAGTTCCCCAA 599 Query 596 CATGCACAAGGTACGCATCTTTGGTATCAATGGTGATAAATAAGTTTCCTTTA-CGGCAA 654 ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || Sbjct 600 CATGCACAAGGTACGCATCTTTGGTATCAATGGTGATAAATAAGTTTTCTTTTGCGGTAA 659 Query 655 GAGAACACCTGAAAGAAG--G-AAAAGGGG-ATATAAGCGAACATATATAT--------G 702 |||||||||| ||||||| | |||||||| |||||||| ||||||||||| | Sbjct 660 GAGAACACCTCAAAGAAGAAGGAAAAGGGGGATATAAGCAAACATATATATATATATATG 719 Query 703 TGTAAATGTTCATATGAGTTGGTTTAATTCTCGAGTC---ATGTTTTTTGTTGGATATTT 759 ||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| Sbjct 720 TGTAAATGTTCATATGAGTTGGTTTAATTCTCGAGTCGTCATGTTTCT-GTTGGATATTT 778 Query 760 GTAAGTAAACT 770 ||||||||||| Sbjct 779 GTAAGTAAACT 789 > Ahg931892 jgi|Araly1|931892|scaffold_304349.1 Length=292 Score = 89.8 bits (48), Expect = 3e-17 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 301 GTTGTTCCCCTGGAATGGCTTGGACTGTTGTTAATCTCGCTCACTTCGTTG 351 ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7 GTTTTTCCCCTGGAATGGCTTGGACTGTTGTTAATCTCGCTCACTTCGTTG 57 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30765194019 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5