BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01230.1
Length=832
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470153 jgi|Araly1|470153|fgenesh2_kg.1__107__AT1G01230.1 1184 0.0
Ahg931892 jgi|Araly1|931892|scaffold_304349.1 89.8 3e-17
> Ahg470153 jgi|Araly1|470153|fgenesh2_kg.1__107__AT1G01230.1
Length=789
Score = 1184 bits (641), Expect = 0.0
Identities = 745/791 (94%), Gaps = 23/791 (3%)
Strand=Plus/Plus
Query 1 GTCGTCTTTCACGGGCACACAAAATTAAACCAAAGAAACAAACAATCCTTGTTCTCGCCG 60
|||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 1 GTCGTCTTTCACGGGCACACAATATTAAACCAAACAAACAAACAATCCTTCTTCTCGCCG 60
Query 61 AAATAGAGAATTTTGTGAATCTGGGTTTTTAGTTCAGGTG-TTAATATAAGATTTTGATC 119
||| ||||||||||||||||||||||||| | || ||||| ||||| |||||||||||||
Sbjct 61 AAAGAGAGAATTTTGTGAATCTGGGTTTTCAATTTAGGTGTTTAATTTAAGATTTTGATC 120
Query 120 AAAAGAAGACGAGATTCGATCCGATCCGATCTGA-TTG---AAGAAGAAATGGCGAATCT 175
||||||||||||||||||||||||| ||||| || ||| ||| |||||||||||||||
Sbjct 121 AAAAGAAGACGAGATTCGATCCGAT-CGATCAGATTTGTACAAGGAGAAATGGCGAATCT 179
Query 176 GTATGTGAAAGCGGTTCCACCACCGGATATGAATAGGAATACGGAATGGTTCATGTATCC 235
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTATGTGAAAGCTGTTCCACCACCGGATATGAATAGGAATACGGAATGGTTCATGTATCC 239
Query 236 AGGAGTTTGGACGACTTACATGCTTATTCTCTTCTTCGGTTGGCTCGTTGTTCTCTCTGT 295
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 AGGAGTTTGGACTACTTACATGCTCATTCTCTTCTTCGGTTGGCTCGTTGTTCTCTCTGT 299
Query 296 CTCTGGTTGTTCCCCTGGAATGGCTTGGACTGTTGTTAATCTCGCTCACTTCGTTGTAAC 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTCTGGTTGTTCCCCTGGAATGGCTTGGACTGTTGTTAATCTCGCTCACTTCGTTGTAAC 359
Query 356 GTATCACAGCTTCCACTGGATGAAAGGAACTCCTTTTGCAGATGACCAAGGAATCTACAA 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTATCACAGCTTCCACTGGATGAAAGGAACTCCTTTTGCAGATGACCAAGGAATCTACAA 419
Query 416 TGGTTTAACTTGGTGGGAACAAATGGACAATGGTCAACAGCTTACCCGCAACCGCAAATT 475
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 TGGTTTAACTTGGTGGGAACAAATGGACAATGGTCAACAACTTACCCGCAACCGCAAATT 479
Query 476 TCTTACCCTAGTTCCTGTTGTTCTGTACTTGATTGCATCGCATACAACAGATTACAGACA 535
||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 480 TCTTACCGTAGTTCCTGTTGTCCTGTACTTGATAGCATCGCATACAACAGATTACAGACA 539
Query 536 TCCATGGCTGTTCCTCAACACACTCGCTGTGATGGTTCTCGTTGTTGCCAAGTTCCCCAA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCCATGGCTGTTCCTCAACACACTCGCTGTGATGGTTCTCGTTGTTGCCAAGTTCCCCAA 599
Query 596 CATGCACAAGGTACGCATCTTTGGTATCAATGGTGATAAATAAGTTTCCTTTA-CGGCAA 654
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 600 CATGCACAAGGTACGCATCTTTGGTATCAATGGTGATAAATAAGTTTTCTTTTGCGGTAA 659
Query 655 GAGAACACCTGAAAGAAG--G-AAAAGGGG-ATATAAGCGAACATATATAT--------G 702
|||||||||| ||||||| | |||||||| |||||||| ||||||||||| |
Sbjct 660 GAGAACACCTCAAAGAAGAAGGAAAAGGGGGATATAAGCAAACATATATATATATATATG 719
Query 703 TGTAAATGTTCATATGAGTTGGTTTAATTCTCGAGTC---ATGTTTTTTGTTGGATATTT 759
||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct 720 TGTAAATGTTCATATGAGTTGGTTTAATTCTCGAGTCGTCATGTTTCT-GTTGGATATTT 778
Query 760 GTAAGTAAACT 770
|||||||||||
Sbjct 779 GTAAGTAAACT 789
> Ahg931892 jgi|Araly1|931892|scaffold_304349.1
Length=292
Score = 89.8 bits (48), Expect = 3e-17
Identities = 50/51 (98%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 301 GTTGTTCCCCTGGAATGGCTTGGACTGTTGTTAATCTCGCTCACTTCGTTG 351
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 GTTTTTCCCCTGGAATGGCTTGGACTGTTGTTAATCTCGCTCACTTCGTTG 57
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30765194019
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5