BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01240.1
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470152 jgi|Araly1|470152|fgenesh2_kg.1__106__AT1G01240.3 1725 0.0
> Ahg470152 jgi|Araly1|470152|fgenesh2_kg.1__106__AT1G01240.3
Length=1806
Score = 1725 bits (934), Expect = 0.0
Identities = 1102/1181 (93%), Gaps = 19/1181 (2%)
Strand=Plus/Plus
Query 119 TTGTGTCTTAATGAAATAATGGGAGCAGCTGAAGCAAGAGCATTGTGGCAAAGAACAGCT 178
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 TTGTGTCTTAATGTGATAATGGGAGCAGCTGAAGCAAGAGCATTGTGGCAAAGAACAGCA 689
Query 179 AGTCGTTGCTTTGTTGTTCATGAGGATGCTAAGATGGCTCCGAGGTTAGCTTGTTGCCAA 238
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 690 AGTCGTTGCTTTGTTGTTCATGAAGATGCGAAGATGGCTCCGAGGTTAGCTTGTTGCCAA 749
Query 239 CACCAACAATCTTCTTCGGGCAACACCGaaaaaaaCAGCTTTTCTTCCGGAAGTTTTGGA 298
|||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 750 CACCAACATTCTTCTTCGGGCAACACCGAAAAAAGCAGCTTTTCTTCAGGAAGTTTTGGA 809
Query 299 GATTCCTCTGA-TT-T-CTCTTGTGATACCAAATGGTGGCTTAAGGGATCAACTGGTTTT 355
||||||||||| || | |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 810 GATTCCTCTGATTTCTCCTCTTGTGATACCAAATGGTGGCTTAAGGGGTCAACTGGATTT 869
Query 356 GATGAGGAGGTTACAAACTCCTTTCTTGAAGATACCAAATGCAAGAAATTGCATGAATTT 415
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 870 GATGAGGAGGTTACAAACTCCTTTTTTGAAGATACCAAATGCAAGAAATTGCAAGAATTT 929
Query 416 GTCGACTTAATCGGAATACGAGAAGAAGAAGACTACAGCTTTATTAGCAAG-AA----A- 469
|||||||| ||||| ||||||||||||||||||||||||||||| |||||| || |
Sbjct 930 GTCGACTTGATCGGGATACGAGAAGAAGAAGACTACAGCTTTATAAGCAAGAAAGCTGAC 989
Query 470 GCTGACGCTACAACACCGTGGTGGAGAAGCACGACGGATAAAGATGAATTAGCTCTCATG 529
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 990 GCTGACGCTACAACGCCGTGGTGGAGAAGCACGACAGATAAAGATGAATTAGCTCTCTTG 1049
Query 530 GTGGCGACTAAATCGGTTGATCATAATATCCAGAATTGTGATCTTCCTCCACCTCA-AAA 588
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1050 GTGGCGACTAAATCGATTGATCATAATATCCAGAATTGTGATCTTCCTCCCCCTCAGAAA 1109
Query 589 ACTCCACAAGAGTATTCACTCCT-CGAGTGGAGAAAAAGGGTTTAAAACAGCGGTTAAAT 647
| |||||||||| ||||||| | | ||| | || || ||||||||| ||||||| |||
Sbjct 1110 A-TCCACAAGAGGATTCACT-GTACTAGTAGTGAGAAGGGGTTTAAACCAGCGGTGCAAT 1167
Query 648 CGCCATGGAAGCAAGGAGTTTGGAAG-GATCGGTTTGAGAGATCTTTGAGTTACAATGGT 706
|||||||||| |||||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct 1168 CGCCATGGAAACAAGGAGTTTGG-AGCGATCGGTTTGAGAGATCTTTGAGTTACAATAGT 1226
Query 707 AGCACAGAGAGCAAGAACACGAGTCCAATGTCTTCCCCTAGAAGTGATGATCTAAGCAAA 766
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1227 AGCACAGAGAGCAAGAACACGAGTCCAATGTCTTCCCCTAGAAATGATGATCTAAGCAAA 1286
Query 767 GGTCAGCTTTTAGAAGCACTAAGGCATTCTCAAACCAGGGCAAGAGAAGCAGAGAGAGCA 826
| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1287 GCTCAGCTTTTAGAAGCATTAAGGCATTCTCAAACCAGAGCAAGAGAAGCAGAGAAAGCA 1346
Query 827 GCGAGAGAAGCTTGCGCTGAGAAAGACCGTGTGATAACAATCTTGTTGAAACAAGCGAGT 886
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1347 GCAAGAGAAGCTTGCGCTGAGAAAGACCGTATGATAACAATCTTGTTGAAACAGGCGAGT 1406
Query 887 CAGATGTTGGCTTATAAGCAATGGTTAAAGCTTCTTGAAATGGAAGCTCTTTATCTGCag 946
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1407 CAGATGTTGGCTTATAAGCAATGGTTAAAGCTTCTAGAAATGGAAGCTCTTTATCTGCAG 1466
Query 947 atgaagaaggaagaagaacaa-gaggaacaggtcaaaggaatgaatctgaagaagagaaa 1005
|||||||||||||||||| || || |||||| |||||||||||||||| |||||||| ||
Sbjct 1467 ATGAAGAAGGAAGAAGAA-AATGAAGAACAGATCAAAGGAATGAATCTTAAGAAGAGGAA 1525
Query 1006 acagagaggggagaagaagaaaaagggtgagactgggagaTATATGATGGCTTTTGCATT 1065
||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1526 ACAAAGAGGGAAGAAGAAGAAAAAGGGTGAGATTGGGAGATATATGATGGCTTTTGCATT 1585
Query 1066 AGGGTTTAGTCTCATTGGTGCTGGTTTGCTCTTAGGTTGGACTGTTGGATGGTTGCTTCC 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1586 AGGGTTTAGTCTCATTGGTGCTGGTTTGCTCTTAGGTTGGACTGTTGGATGGTTGTTTCC 1645
Query 1126 CTTCTAGAATCTTGAAA-TGTCTTCTCTTTGGTCACTCATCTTTTCAAGAGTTTTAGGTT 1184
||||||||||||||||| |||||| | |||| ||||| ||||||||||||||||||||||
Sbjct 1646 CTTCTAGAATCTTGAAAATGTCTTTTGTTTGATCACTGATCTTTTCAAGAGTTTTAGGTT 1705
Query 1185 TTATAACTTTTCACTTTACCTCTAAAAttgtgtgtatattttgttaatgtatgtattgtg 1244
|||||||||||||| || ||||||||||||||||||| || |||||||||||||||||||
Sbjct 1706 TTATAACTTTTCACGTTGCCTCTAAAATTGTGTGTATGTTGTGTTAATGTATGTATTGTG 1765
Query 1245 tgatgtttgtgt-aAATTTAATCTTCTGTAGAAGTTTATTT 1284
|||| ||||||| |||||||||||||| ||||||| |||||
Sbjct 1766 TGATATTTGTGTTAAATTTAATCTTCTATAGAAGTATATTT 1806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48149244171
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5