BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01250.1
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470149 jgi|Araly1|470149|fgenesh2_kg.1__103__AT1G01250.1 1286 0.0
> Ahg470149 jgi|Araly1|470149|fgenesh2_kg.1__103__AT1G01250.1
Length=814
Score = 1286 bits (696), Expect = 0.0
Identities = 780/819 (95%), Gaps = 12/819 (1%)
Strand=Plus/Plus
Query 26 CACCACAGAGAATGAAGCTATCATCACCACCAGTTACCAACAACGAACCAACCGCCACCG 85
||| ||||||||||||||||||| |||||||| |||| |||| |||||||||||||||||
Sbjct 1 CACAACAGAGAATGAAGCTATCACCACCACCACTTACTAACAGCGAACCAACCGCCACCG 60
Query 86 CTTCTGCCGTTAAATCTTGCGGCGGAGGAGGTAAAGAAACCAGCTCATCGACCACGAGGC 145
|||||||||| |||||||||||||||| || ||||||||||| | |||||||||||||
Sbjct 61 CTTCTGCCGTGAAATCTTGCGGCGGAGTTGGCAAAGAAACCAG--C-TCGACCACGAGGC 117
Query 146 ATCCAGTGTACCACGGAGTTCGCAAACGCCGATGGGGAAAATGGGTTTCTGAGATCAGAG 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ATCCAGTGTACCACGGAGTTCGCAAACGCCGATGGGGAAAATGGGTTTCTGAGATCAGAG 177
Query 206 AGCCCCGGAAAAAGTCTCGGATTTGGCTCGGATCTTTTCCGGTGCCGGAGATGGCTGCTA 265
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AGCCCCGGAAAAAATCTCGGATTTGGCTCGGATCTTTTCCGGTGCCGGAGATGGCTGCTA 237
Query 266 AGGCCTACGACGTGGCAGCGTTTTGTCTAAAAGGTAGAAAAGCTCAGCTGAA-TTTCCCT 324
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 238 AAGCCTACGACGTGGCAGCGTTTTGTCTAAAAGGTAGAAAAGCTCAGCTGAATTTTCCC- 296
Query 325 GAAGAAATCGAGGATCTACCTCGACCGTCCACGTGTACTCCCAGAGATATCCAAGTCGCA 384
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GACGAAATCGACGATCTACCTCGACCGTCCACGTGTACTCCCAGAGATATCCAAGTCGCG 356
Query 385 GCGGCCAAAGCAGCCAACGCCGTGAAGATCATCAAAATGGGAGATGATGACGTGGCAGGA 444
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct 357 GCGGCCAAAGCAGCCAACGGCGTCAAGATCATCAAAATGGGAGATGATGACGTGGCAGAA 416
Query 445 ATAGACGACGGAGATGATTTCTGGGAAGGCATTGAGCTGCCTGAGCTTATGATGAGTGGA 504
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 417 ATAGACGACGGAGATGATTTCTGGGAAGGCATTGAGCTGCCGGAGCTTATGATGACTGGA 476
Query 505 GGTGGGTGGTCGCCGGAGCCTTTTGTTGCCGGAGATGATGCCACGTGGCTTGTCGACGGA 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GGTGGGTGGTCGCCGGAGCCTTTTGTTGCCGGAGATGATGCCACGTGGCTTGTCGACGGA 536
Query 565 GACTTGTATCAGTATCAGTTCATGGCGTGTCTGTGAGTGTTGCTGTCGATTGTGTCGTAT 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GACTTGTATCAGTATCAGTTCATGGCGTGTCTGTGAGTGTTGCTGTCGATTGTGTCGTAT 596
Query 625 TCGTTATACGTGTACGTTGTATCGTTATTGTGTTGGCTCACTTAATTTAATGCATATGCA 684
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 597 TCGTTATACGTGTACGTTGTATTGTTATTGTGTTGGCTCACTTAATTTAATGCATATGCA 656
Query 685 TGTATATTTTCATTTATTTGTTTCTAGTTTATTGTTTTACGCGATTAATAATTAGATACC 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TGTATATTTTCATTTATTTGTTTCTAGTTTATTGTTTTACGCGATTAATAATTAGATACC 716
Query 745 TGTTTCTCAAGTTAGTTATCAGGTTTGTACGCATCTACAAAAATACGTATAA-G-T---- 798
||||||| |||||||||||||||||| |||| |||| | | |||||||||| | |
Sbjct 717 TGTTTCTTAAGTTAGTTATCAGGTTTCTACG-ATCTTGATATATACGTATAACGGTATAA 775
Query 799 GTATGTTCTTATATACAGTTTTTGTTTGCATAAGTATTG 837
|||||||||||||||||||||| ||||||||||||||||
Sbjct 776 GTATGTTCTTATATACAGTTTTAGTTTGCATAAGTATTG 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31070177355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5