BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01260.1
Length=2578
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470147 jgi|Araly1|470147|fgenesh2_kg.1__101__AT1G01260.1 2902 0.0
Ahg918835 jgi|Araly1|918835|scaffold_100116.1 475 6e-133
> Ahg470147 jgi|Araly1|470147|fgenesh2_kg.1__101__AT1G01260.1
Length=2289
Score = 2902 bits (1571), Expect = 0.0
Identities = 1860/1995 (93%), Gaps = 38/1995 (2%)
Strand=Plus/Plus
Query 563 GATGAATATTGGTCGCCTAGTGTGGAACGAGGACGATAAAGCGATTGTTGCGTCATTACT 622
|||||||||||||||| |||||||||||||||| ||||||||||||||||| || |||||
Sbjct 308 GATGAATATTGGTCGCGTAGTGTGGAACGAGGATGATAAAGCGATTGTTGCTTCGTTACT 367
Query 623 GGGCAAACGAGCTCTCGATTACTTGCTTTCCAACTCTGTTTCCAATGCTAATCTCTTGAT 682
||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 368 TGGCAAACGAGCTCTCGATTACTTGCTTTCGAACTCTGTTTCAAATGCAAATCTCTTGAT 427
Query 683 GACT-CTAGGAAGCGACGAGAATCTGCAGAACAAGCTCTCGGATCTCGTCGAGAGACCCA 741
|||| | ||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 428 GACTAC-AGGAAGCGACGAGAATCTGCAGAACAAGCTCTCTGATCTCGTTGAGAGACCCA 486
Query 742 ACGCTTCTAATTTCTCTTGGAACTACGCCATTTTCTGGCAGATTTCCAGGTCAAAGGCCG 801
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 487 ACGCTTCTAATTTCTCGTGGAACTACGCCATTTTCTGGCAGATTTCGAGGTCAAAGGCCG 546
Query 802 GAGATTTGGTTCTCTGTTGGGGCGATGGATATTGCAGAGAGCCTAAAGAAGGAGAGAAAT 861
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 547 GAGATTTGGTGCTCTGTTGGGGAGATGGATATTGCAGAGAGCCTAAAGAAGGTGAGAAGT 606
Query 862 CAGAGATCGTTAGGATTCTAAGTATGGGAAGAGAAGAAGAAACGCATCAGACTATGAGAA 921
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 607 CAGAGATCGTTAGAATTCTGAGTATGGGAAGAGAAGAAGAAACGCATCAGACTATGAGAA 666
Query 922 AGAGAGTATTGCAAAAGCTTCATGATTTGTTTGGTGGCTCAGAAGAAGAGAACTGTGCTT 981
||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 667 AGAGAGTTTTGCAAAAGCTTCATGATTTGTTTGGTGGGTTAGAAGAAGAGAACTGTGCTT 726
Query 982 TAGGACTAGATAGAGTTACTGACACTGAGATGTTTCTTCTTTCTTCTATGTATTTCTCAT 1041
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 727 TAGGACTAGATAGAGTTACTGACACTGAGATGTTTCTTCTTTCTTCAATGTATTTCTCAT 786
Query 1042 TCCCTCGAGGTGAAGGTGGTCCAGGCAAGTGTTTTGCCTCTGCTAAACCTGTTTGGTTAT 1101
||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 787 TCCCTCGAGGTGAAGGTGGTCCAGGGAAGTGTTTTGCCTCTGGGAAACCGGTTTGGTTAT 846
Query 1102 CCGATGTCGTCAATTCGGGTTCTGATTATTGCGTTAGATCGTTTCTTGCTAAATCTGCTG 1161
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 847 CCGATGTGGTGAATTCGGGTTCTGATTATTGTGTTAGATCGTTTCTTGCTAAATCTGCTG 906
Query 1162 GCATTCAGACTGTTGTTTTGGTTCCTACTGATCTTGGTGTTGTTGAGTTAGGCTCAACTT 1221
| |||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 907 GAATTCAGACGGTTGTTTTGGTTCCTACTGATCTTGGTGTTGTCGAGCTAGGCTCAACTT 966
Query 1222 CATGTTTGCCTGAAAGTGAAGACTCAATCTTGTCTATAAGATCATTGTTTACCAGTAGTT 1281
|||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||
Sbjct 967 CATGTTTGCCTGAAAGTGAAGAGTCAATCTTGTCTATAAGATCATTGTTTTCGAGTAGTT 1026
Query 1282 TGCCTCCGGTTAGAGCTGTTGCTTTAC--CTGTTACTGTAGCTGAAAAGAT---TGAT-G 1335
|||||||||||||||||| || || ||||| || || |||||||||| |||| |
Sbjct 1027 TGCCTCCGGTTAGAGCTG-TG----ACGGCTGTTGCTTTACCTGAAAAGATAGATGATAG 1081
Query 1336 -ATAACAG--AA-----CGAAGATATTCGGCAAGGATTTGCACAATTCAGGGTTTCTTCA 1387
| ||| | || |||||||||| || |||||| ||||||||||||| ||||||||
Sbjct 1082 CAGAACGGTTAATGCTTCGAAGATATTTGGGAAGGATCTGCACAATTCAGGTTTTCTTCA 1141
Query 1388 ACATCATCAGCATCACcaacaacaacaacaacaaccaccgcaacagcaacaGCATAGACA 1447
||||||||| |||||||||||||| | |||| || ||||| ||||||||||||||
Sbjct 1142 TCATCATCAGTTTCACCAACAACAAC--C-ACAA-CA--ACAACAACAACAGCATAGACA 1195
Query 1448 GTTTAGAGAGAAACTCACGGTTAGAAAAATGGATGATAGAGCTCCCAAGAGATTAGATGC 1507
||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1196 GTTCAGAGAGAAACTTACGGTTAGAAAAATGGATGATAGAGCTCCCAAGAGAGTAGATGC 1255
Query 1508 TTATCCGAATAATGGGAACAGGTTTATGTTTTCGAACCCAGGCACCAACAACAACACTCT 1567
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1256 TTATCCTAATAATGGGAATAGGTTTATGTTTTCGAACCCAGGCACCAACAACAATTCTCT 1315
Query 1568 TCTGAGTCCTACTTGGGTTCAACCTGAGAACTACACGAGGCCAATCAACGTGAAGGAAGT 1627
|||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 1316 TCTGAGTCCTACTTGGGTCCAACCGGAGAACTACACGAGGCCCATCAATGTGAAGGAAGT 1375
Query 1628 TCCAAGCACGGATGAGTTCAAGTTTTTACCTTTGCAGCAATCATCGCAGAGGCTGCTTCC 1687
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TCCGAGCACGGATGAGTTCAAGTTTTTACCTTTGCAGCAATCATCGCAGAGGCTGCTTCC 1435
Query 1688 TCCTGCTCAAATGCAGATAGATTTCTCTGCTGCGAGTTCAAGGGCTTCAGAGAATAATTC 1747
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1436 TCCTGCTCAAATGCAGATTGATTTCTCTGCTGCGAGTTCAAGGGCTTCCGAGAATAATTC 1495
Query 1748 AGATGGAGAAGGAGGAGGGGAATGGGCAGATGCAGTGGGTGCTGATGA-ATCTGGTAACA 1806
|||||||||||||||||||||||||||||| || |||||||||||||| | |||||||||
Sbjct 1496 AGATGGAGAAGGAGGAGGGGAATGGGCAGACGCGGTGGGTGCTGATGACA-CTGGTAACA 1554
Query 1807 ACAGACCAAGAAAACGCGGAAGGAGACCTGCCAACGGAAGAGCGGAAGCTTTGAACCATG 1866
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1555 ACAGACCAAGAAAACGTGGAAGGAGACCTGCCAACGGAAGAGTGGAAGCTTTGAACCATG 1614
Query 1867 TAGAAGCAGAGAGGCAGAGGCGTGAGAAGCTTAACCAGAGGTTTTACGCTCTGAGATCCG 1926
| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 TTGAAGCAGAAAGGCAGCGGCGTGAGAAGCTTAACCAGAGGTTTTACGCTCTGAGATCCG 1674
Query 1927 TTGTTCCCAACATATCCAAGATGGACAAAGCGTCCTTGTTGGGAGACGCGGTTTCTTATA 1986
||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 1675 TTGTTCCCAACATTTCCAAGATGGACAAAGCGTCGTTGTTGGGAGACGCAGTTTCTTACA 1734
Query 1987 TAAACGAGCTTCACGCGAAGCTAAAGGTCATGGAAGCagagagagagagGTTAGGGTATA 2046
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1735 TAAACGAGCTTCACGCCAAGCTAAAGGTCATGGAAGCAGAGAGAGAGAGATTAGGGTATA 1794
Query 2047 GCTCAAATCCACCTATCAGCTTGGATTCAGATATAAATGTTCAAACCTCAGGTGAAGATG 2106
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 1795 GCTCAAATCCACCTATCAGCTTGGAATCGGATATTAATGTTCAAACCTCAGGTGAAGATG 1854
Query 2107 TCACAGTGAGGATAAACTGTCCGTTGGAGTCTCATCCGGCTTCCAGAATCTTCCATGCGT 2166
|||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1855 TCACAGTGAGAATAAACTGTCCGTTGGAGTCTCATCCAGCTTCTAGAATCTTCCATGCGT 1914
Query 2167 TTGAAGAGAGTAAAGTAGAAGTGATAAACTCGAACCTGGAAGTTTCTCAGGACACAGTGT 2226
||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1915 TTGAAGAGACTAAAGTAGAAGTGATGAACTCGAACCTTGAAGTTTCTCAGGACACAGTGT 1974
Query 2227 TGCATACGTTTGTAGTCAAATCTGAAGAATTAACGAAAGAGAAGCTGATATCGGCCTTGT 2286
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1975 TGCATACGTTTGTAGTCAAATCTGAAGAATTAACGAAAGAGAAGCTGATATCTGCGTTGT 2034
Query 2287 CTAGAGAGCAAACAAATTCAGTTCAGTCAAGAACATCATCAGGTAGATAGCCTTTTGAGA 2346
||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2035 CTAGAGAGCCATCAAATTCAGTTCAGTCAAGAACATCATCTGGTAGATAGCCTTTTGAGA 2094
Query 2347 GACAGAAGAAGGTGGAA-GTAAGTTTGTAATCAAGAACCGGttttgaatggttctttttt 2405
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2095 GATAGAAGAAGGTGGAAAGTAAGTTTGTAATCAAGAACCGGTTTTGAATGGTTCTTTTTT 2154
Query 2406 -t--cttctaggtatcttttgtttttaccttttttt-----GGTTATATACCTGTAAGAA 2457
| ||||||||| |||||||||||| | ||||||| |||||||||||||||||||
Sbjct 2155 GTTTCTTCTAGGTTTCTTTTGTTTTTGCTTTTTTTTTTTTTGGTTATATACCTGTAAGAA 2214
Query 2458 TCCTCCAAACTAGGATTTTAGAAGTTTTATTGACAAAAGTAGACATTATCATTTACTCGT 2517
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2215 TCCTCCAAACTAGGATTTTAGAAGTTTAATTGACAAAAGTAGACATTATCATTTACTCGG 2274
Query 2518 TTTACAGTGGACAAA 2532
|||||||||||||||
Sbjct 2275 TTTACAGTGGACAAA 2289
Score = 246 bits (133), Expect = 5e-64
Identities = 285/349 (82%), Gaps = 48/349 (14%)
Strand=Plus/Plus
Query 13 AATAAAAAAGAGCACGAAGAACATGCGTCGGAC---TCTCTCTCTTCCTTGAATTCATTC 69
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 AATAAAAAAGAGCACGAAGAACATGCGTCGGACTTTTCTCTCTCTTCCTTGAATTCATTC 60
Query 70 AATTGGCCACGGCGACAAAACAGGGAGCCGATACAGCGAAACTGATACATCtttttttAT 129
|||||||||||||||||||| |||||||||||| ||||||||||| | |||||||||| |
Sbjct 61 AATTGGCCACGGCGACAAAAGAGGGAGCCGATAGAGCGAAACTGAAAAATCTTTTTTTGT 120
Query 130 TTTC--T-GGATTCTTAGGGTTCTTTTTCGGGGAATTTAGGTAATTTGTTTGTCCATTTT 186
|||| | || |||||||||||||||||||||||| | | || |||||||||||||
Sbjct 121 TTTCAATTGGCTTCTTAGGGTTCTTTTTCGGGGAA---A--T--TT-GTTTGTCCATTTT 172
Query 187 GGTGGGGTTTGGGAGATTTAAAATTTGTGtttttttttGGGTCGGATTCTCAAAAATCTG 246
| || | | | || ||||||||| ||||| || ||||||||| |||||
Sbjct 173 G-TGAGAT-----A--TT-AAAATTTGT-TTTTT----GG-TCGGATTCT-AAAAA---- 212
Query 247 ATTTTGAGGAGAAAATCTCGGTGGAAGAGACTTGATTCAAATCTTCTTTACTGGTAAAAA 306
| | | || ||||||||||||| || | |||||||||||| ||||||||||||
Sbjct 213 A-----A--A-AA--TCTCGGTGGAAGA--CTGGCTTCAAATCTTCTCTACTGGTAAAAA 260
Query 307 TATATTCTTCTCAATTCCTCATTTT-CTGTTGGTGGAGTTTGATTTTTG 354
||| ||||||| ||| | ||||||| || |||||| |||||||||||||
Sbjct 261 TATCTTCTTCTTAAT-CTTCATTTTTCTCTTGGTGAAGTTTGATTTTTG 308
> Ahg918835 jgi|Araly1|918835|scaffold_100116.1
Length=403
Score = 475 bits (257), Expect = 6e-133
Identities = 287/302 (95%), Gaps = 0/302 (0%)
Strand=Plus/Plus
Query 2058 CCTATCAGCTTGGATTCAGATATAAATGTTCAAACCTCAGGTGAAGATGTCACAGTGAGG 2117
|||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 102 CCTATCAGCTTGGAATCGGATATTAATGTTCAAACCTCAGGTGAAGATGTCACAGTGAGA 161
Query 2118 ATAAACTGTCCGTTGGAGTCTCATCCGGCTTCCAGAATCTTCCATGCGTTTGAAGAGAGT 2177
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
Sbjct 162 ATAAACTGTCCGTTGGAGTCTCATCCAGCTTCTAGAATCTTCCATGCGTTTGAAGAGACT 221
Query 2178 AAAGTAGAAGTGATAAACTCGAACCTGGAAGTTTCTCAGGACACAGTGTTGCATACGTTT 2237
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 222 AAAGTAGAAGTGATGAACTCGAACCTTGAAGTTTCTCAGGACACAGTGTTGCATACGTTT 281
Query 2238 GTAGTCAAATCTGAAGAATTAACGAAAGAGAAGCTGATATCGGCCTTGTCTAGAGAGCAA 2297
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
Sbjct 282 GTAGTCAAATCTGAAGAATTAACGAAAGAGAAGCTGATATCTGCGTTGTCTAGAGAGCCA 341
Query 2298 ACAAATTCAGTTCAGTCAAGAACATCATCAGGTAGATAGCCTTTTGAGAGACAGAAGAAG 2357
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 342 TCAAATTCAGTTCAGTCAAGAACATCATCTGGTAGATAGCCTTTTGAGAGATAGAAGAAG 401
Query 2358 GT 2359
||
Sbjct 402 GT 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97206305240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5