BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01280.1
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470146 jgi|Araly1|470146|fgenesh2_kg.1__100__AT1G01280.1 1559 0.0
> Ahg470146 jgi|Araly1|470146|fgenesh2_kg.1__100__AT1G01280.1
Length=1533
Score = 1559 bits (844), Expect = 0.0
Identities = 959/1015 (94%), Gaps = 6/1015 (1%)
Strand=Plus/Plus
Query 548 TATTGGGTGCTTTCTCTATGAACAATGTGACTAGGATGCTACTAGGGAAACAATTCTTTG 607
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 485 TATTGGGTGCTTTCTCTATGAACAATGTGACTCGGATGCTACTAGGGAAACAATTCTTTG 544
Query 608 GGCCTGGATCTCTAGTTA-GCCCAAAAGAAGCCCAAGAGTTTTTGCACATAACTCACAAA 666
| ||||||||||||| || |||||||||||||||||||||| |||||||||||||||||
Sbjct 545 GACCTGGATCTCTAG-TACCCCCAAAAGAAGCCCAAGAGTTTATGCACATAACTCACAAA 603
Query 667 TTGTTTTGGCTGTTGGGTGTAATTTACCTAGGAGATTACTTGCCATTTTGGAGATGGGTG 726
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 604 TTGTTTTGGCTGTTGGGTGTAATTTACCTAGGAGACTACTTGCCATTTTGGAGATGGGTG 663
Query 727 GATCCGTCCGGATGCGAGAAAGAAATGAGGGACGTGGAGAAGCGTGTTGACGAGTTTCAC 786
||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct 664 GATCCGTCCGGATGCGAGAAAGAAATGAGGGACGTGGAGAAACGTGTTGACAATTTTCAC 723
Query 787 ACTAAGATCATCGACGAGCACAGAAGGGCAAAAC-TGGAAGATGAAGATAAAAACGGA-G 844
|||||||||||||||||||||| ||||||||||| | ||| | ||||||| ||| || |
Sbjct 724 ACTAAGATCATCGACGAGCACAAAAGGGCAAAACAT-GAAAAAGAAGATACTAAC-GACG 781
Query 845 ACATGGATTTTGTTGACGTTTTGTTGTCTCTACCTGGTGAGAACGGGAAGGCACACATGG 904
|||| ||||||||||||||||| ||||||||||||||||||||||| || | ||||||||
Sbjct 782 ACATAGATTTTGTTGACGTTTTATTGTCTCTACCTGGTGAGAACGGAAAAGAACACATGG 841
Query 905 AAGACGTTGAAATTAAAGCTCTAATTCAGGACATGATAGCTGCTGCGACAGATACGTCAG 964
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 842 AAGACGTTGAAATTAAAGCTCTAGTTCAGGACATGATAGCTGCTGCGACAGATACGTCAG 901
Query 965 CAGTCACAAACGAATGGGCAATGGCTGAAGCGATCAAGCAACCGCGAGTGATGCGTAAAA 1024
| |||||||||||||||||||||||||||| ||| |||||||| ||||| ||||||||||
Sbjct 902 CGGTCACAAACGAATGGGCAATGGCTGAAGTGATTAAGCAACCACGAGTAATGCGTAAAA 961
Query 1025 TTCAAGAAGAACTCGATAATGTCGTAGGATCAAATCGAATGGTCGACGAATCGGATCTAG 1084
|||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 962 TTCAAGAAGAGCTCGATAATGTCGTAGGATCAAACCGAATGGTCGATGAATCAGATCTAG 1021
Query 1085 TCCATTTAAACTATCTACGTTGTGTGGTACGAGAGACGTTCCGAATGCATCCAGCCGGAC 1144
||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||
Sbjct 1022 TCCATTTAAACTATCTACGATGTGTGGTACGTGAAACGTTCCGAATGCATCCGGCCGGAC 1081
Query 1145 CATTCTTGATCCCTCACGAATCCGTCCGAGCAACAACGATCAACGGCTACTACATCCCGG 1204
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
Sbjct 1082 CATTCTTGATCCCTCACGAATCCGTCCGACCAACGACGATCAACGGCTACTACATCCCAG 1141
Query 1205 CAAAGACACGTGTCTTCATCAATACACATGGATTGGGCCGAAACACTAAGATATGGGACG 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 CAAAGACACGTGTCTTCATCAATACACATGGATTGGGCCGAAACACTAAGATATGGGACG 1201
Query 1265 ACGTGGAAGACTTCAGGCCAGAACGACACTGGCCCGTTGAAGGTAGCGGACGCGTTGAGA 1324
|||||||||| || ||||| |||||||| |||||||| || |||||||||||||||||||
Sbjct 1202 ACGTGGAAGATTTTAGGCCCGAACGACATTGGCCCGTGGATGGTAGCGGACGCGTTGAGA 1261
Query 1325 TAAGTCATGGACCGGATTTTAAGATATTGCCGTTTAGTGCCGGCAAGAGGAAATGTCCCG 1384
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 TAAGCCACGGACCGGATTTTAAGATATTGCCGTTTAGTGCCGGCAAGAGGAAATGTCCCG 1321
Query 1385 GAGCTCCGTTAGGTGTGACGATGGTGCTAATGGCTTTGGCTCGGCTCTTCCATTGCTTTG 1444
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1322 GAGCTCCGTTAGGTGTGACGATGGTTCTAATGGCTTTGGCTCGGCTCTTCCATTGCTTTG 1381
Query 1445 AATGGTCTTCACCGGGAAATATTGATACGGTGGAAGTTTATGGCATGACTATGCCTAAGG 1504
| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 1382 ACTGGTCTTCACCGGAAAATATCGATACGGTGGAAGTTTACGGCATGACTATGCCTAAAG 1441
Query 1505 CTAAACCATTACGGGCAATCGCTAAGCCACGATTGGCAGCTCATTTGTACACATA 1559
||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 CTAAACCATTATGGGCAATCGCTAAGCCACGATTGGCAGCTCATTTGTACACATA 1496
Score = 749 bits (405), Expect = 0.0
Identities = 457/483 (95%), Gaps = 0/483 (0%)
Strand=Plus/Plus
Query 1 CTTGTTGAATATAGAATATAAGATTAGATGATTTTGGTGCTAGCCTCCCTCTTCGCTGTT 60
||| ||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1 CTTATTGAACATAGAATATAAGATTAGATGATTTTGGTGCTTGTCTCCCTCTTCGCTGTT 60
Query 61 CTCATTCTTAATGTTCTTCTATGGAGATGGCTCAAGGCTTCAGCATGTAAAGCCCAAAGG 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTATTCTTAATGTTCTTCTATGGAGATGGCTCAAGGCTTCAGCATGTAAAGCCCAAAGG 120
Query 121 CTTCCTCCAGGTCCACCAAGATTGCCTATTTTGGGTAACCTTCTTCAATTGGGGCCTTTA 180
|||||||||||||||||||| | ||||||||||||||||||||| |||||||| ||||||
Sbjct 121 CTTCCTCCAGGTCCACCAAGGTGGCCTATTTTGGGTAACCTTCTCCAATTGGGCCCTTTA 180
Query 181 CCTCATCGGGACTTGGCTTCTCTATGTGATAAGTACGGCCCACTTGTCTACCTCCGGCTT 240
|||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||||||
Sbjct 181 CCTCATCGGGACTTGGCTGGTCTATGCGATAAGTACGGACCACTAGTCTACCTCCGGCTT 240
Query 241 GGAAATGTAGATGCTATCACAACGAACGATCCCGATACCATCCGTGAGATTCTTTTGCGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 241 GGAAATGTAGATGCTATCACAACGAACGATCCCGATACCATCCGTGAGATTCTCTTACGG 300
Query 301 CAGGACGATGTTTTTTCATCGAGACCCAAAACACTCGCCGCAGTCCACCTAGCGTATGGA 360
|| ||||| |||||| ||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 301 CAAGACGACGTTTTTGCATCGAGGCCCAAAACACTTGCCGCAGTCCACCTTGCGTATGGA 360
Query 361 TGTGGGGACGTTGCATTAGCGCCAATGGGCCCGCATTGGAAAAGAATGAGGAGGATATGC 420
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 TGTGGGGACGTCGCATTAGCGCCAATGGGCCCCCATTGGAAAAGAATGAGGAGGATATGC 420
Query 421 ATGGAACACCTACTTACAACCAAAAGGCTTGAATCTTTTACAACCCAACGGGCTGAGGAA 480
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 421 ATGGAACACCTACTTACAACCAAAAGGCTTGAATCATTTGCAACCCAACGGGCTGAGGAA 480
Query 481 GCT 483
|||
Sbjct 481 GCT 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60030226120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5