BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01290.1
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311305 jgi|Araly1|311305|fgenesh1_pm.C_scaffold_1000085 1094 0.0
> Ahg311305 jgi|Araly1|311305|fgenesh1_pm.C_scaffold_1000085
Length=831
Score = 1094 bits (592), Expect = 0.0
Identities = 754/828 (91%), Gaps = 27/828 (3%)
Strand=Plus/Plus
Query 14 ATGATTTCGACGCTCCGTCGCGCCGTGTTTCTCCGTCGATTTCCGGCGGTGGTTTCTCCG 73
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGATTTCGATGCTCCGTCGCGCCGTGTTTCTCCGTCGATTTCCGGCGGTGATTTCTCCG 60
Query 74 ATCAAAAGGGCTTTCAGCAGTAGAATTGACGATGAATTCGATCCCCAAATCATGAATATA 133
|| ||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||
Sbjct 61 ATGAAAAGGGCTTTCAGCAGTAAAATTCACGATGAAATCGATCCCCAAATCATGAATATA 120
Query 134 AATGAGCTGAATCAGGAGATGCAGTCAATCTTTGGACAAGAACCTTCTCCC----GA--- 186
|||||||||||||||| ||| |||||||||||||| ||||||| |||||| ||
Sbjct 121 CATGAGCTGAATCAGGAAATGAAGTCAATCTTTGGAGAAGAACCCTCTCCCGATGGATTT 180
Query 187 T--GGTCCTGGGACAATGGATTTCTCTGAGTTGAAATCATCCAAAATCGAACCTTTG--A 242
| |||||| |||||||||||||||||||||| || ||||||||| ||||||||| |
Sbjct 181 TCCGGTCCTACGACAATGGATTTCTCTGAGTTG-AA--ATCCAAAATTGAACCTTTGAAA 237
Query 243 ---G---ATC-GAAGAATAT-TGATTTTAGA-CAACAAATTGAGTATCATAAATCTACAC 293
| ||| | ||||| | |||||||||| | ||| ||||||||||| |||||||| |
Sbjct 238 TCTGCAAATCTGGAGAAT-TCTGATTTTAGATC-ACATATTGAGTATCAGAAATCTACGC 295
Query 294 ACTCGAGCAAGAATGATTCGCAAGCTATAGAACAATATGCAAAAGTGGCTAGTGATATGT 353
|||||||||||| ||||| |||||||||||||||| ||||||||||||| |||||||||
Sbjct 296 GCTCGAGCAAGAACGATTCACAAGCTATAGAACAATCTGCAAAAGTGGCTTGTGATATGT 355
Query 354 CTAAGCTAACACATGTTGGTATCGCAGGGGAAGCTCAAATGGTGGATGTTTCTTCTAAGG 413
|||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 356 CTAAGCTAACCCATGTTGGGATCTCAGGGGAAGCTCAAATGGTGGATGTTTCTTCTAAGG 415
Query 414 ACAATTCCAAGAGAACTGCATTGGCCTGTTGTAAAGTTATTCTTGGGAAACGAGTATTT- 472
||||| | ||||||||||||||||| |||||||||||| ||||||||||| |||| |||
Sbjct 416 ACAATACTAAGAGAACTGCATTGGCTTGTTGTAAAGTTGTTCTTGGGAAAAGAGT-TTTC 474
Query 473 GATTTGGTCTTAGCGAATCAAATGGGGAAAGGAGATGTTCTTGGAGTGGCGAAAATAGCT 532
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 475 GATTTGGTGTTAGCGAATCAAATGGGTAAAGGAGATGTTCTTGGAGTGGCGAAAATCGCT 534
Query 533 GGGATCAACGGAGCAAAACAAACCAGCAGCTTAATACCATTGTGTCATAACATTGCTCTT 592
||||| ||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 535 GGGATTAACGGAGCAAAACAAACTAGTAGCTTAATACCATTGTGTCATAACATTTCTCTT 594
Query 593 ACGCATGTTCGTGTAGACTTACGACTAAACCCTGAGGATTTTAGTGTTGACATTGAAGGA 652
|||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 595 ACGCATGTTCGTGTCGACCTAAGACTAAACCCTGAGGATTTTAGTGTTGACATTGAAGGA 654
Query 653 GAAGCTTCTTGCACTGGAAAAACCGGAGTTGAGATGGAAGCTATGACTGCTGTATCAGTT 712
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GAAGCTTCTTGCACTGGGAAAACCGGAGTTGAGATGGAAGCTATGACTGCTGTATCAGTT 714
Query 713 GCTGGTTTGACTGTTTACGATATGTGTAAGGCTGCTTCCAAAGATATCAGTATTACAGAC 772
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 715 GCTGGTTTAACGGTTTACGATATGTGTAAGGCTGCTTCGAAAGATATCAGTATTACAGAC 774
Query 773 GTGAGGCTCGAGCGTAAAACTGGTGGAAAGAGCGGGTCTTGGTCTAGA 820
||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 775 GTGAGACTCGAGCGTAAAACTGGTGGAAAGAGCGGGTATTGGTCTAGA 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40181554518
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5