BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01300.1
Length=1822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470145 jgi|Araly1|470145|fgenesh2_kg.1__99__AT1G01300.1 2314 0.0
> Ahg470145 jgi|Araly1|470145|fgenesh2_kg.1__99__AT1G01300.1
Length=1651
Score = 2314 bits (1253), Expect = 0.0
Identities = 1444/1535 (94%), Gaps = 17/1535 (1%)
Strand=Plus/Plus
Query 115 aaaaaaaGATGGTAGGAAGAAGAAAAGCTTTActcttttctctctgtttcttcttcctct 174
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AAAAAAA-ATGGTAGGAAGAAGAAAAGCTTTACTCTTTTCTCTTTGTTTCTTCTTCCTCT 59
Query 175 ctcttccttccttctcttcccttccatccttccaaaccctattccccaattctcattccc 234
||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||||| |
Sbjct 60 CTCTTCCTTGCTTCTCTTCTCTTCCATCATTCCAAACCCTAATCCCCAATTCTCATTCTC 119
Query 235 ttccttGTGCTTCTCCCGTCTCATTCCAACCCG-A--C---TCCGACTCCGAGTCACTGC 288
|||||| ||||||||| ||||||||||||||| | | ||||||| ||||||||||
Sbjct 120 TTCCTTCAGCTTCTCCCATCTCATTCCAACCCGAATCCGAACCCGACTCTGAGTCACTGC 179
Query 289 TAGAATCCGAATTTGAATCCGGATCCGACTCCGAGTCTTCTTCTTCCATTACTCTAAACC 348
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 TAGGATCCGAATTTGAATCCGGATCCGACTCCGAG------TCTTCCATTACTCTAAACC 233
Query 349 TCGACCACATCGATGCTCTCTCCTCCAACAAAACACC-CGACGAGCTATTCAGCTCCCGT 407
||||||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||
Sbjct 234 TCGACCACATCGATGCTCTCTCCTCCAACAAAACACCAC-AAGAGCTCTTCAGCTCCCGT 292
Query 408 CTCCAACGTGACTCCCGGCGCGTGAAATCTATCGCCACACTCGCCGCTCAAATCCCCGGA 467
|||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 293 CTCCAACGCGACTCCCGGCGCGTGAAATCAATCGCCTCACTCGCCGCTCAAATCCCCGGG 352
Query 468 AGAAACGTGACTCACGCGCCACGACCCGGTGGATTCAGCAGCTCAGTCGTCTCTGGTCTC 527
||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 353 AGAAACGTGACTCGCGCGCCACGTCCCGGTGGATTCAGCAGCTCAGTGGTCTCTGGTCTC 412
Query 528 TCTCAAGGAAGCGGTGAATACTTCACGCGCCTCGGTGTCGGCACTCCGGCGAGATATGTT 587
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 413 TCTCAAGGAAGTGGTGAATACTTCACGCGCCTCGGTGTCGGAACTCCGGCGAGATATGTT 472
Query 588 TACATGGTGCTCGACACCGGCAGCGACATCGTCTGGCTACAATGCGCTCCTTGTCGGAGA 647
|||||||||||||||||||| || |||||||| ||||| ||||| |||||||||||||||
Sbjct 473 TACATGGTGCTCGACACCGGAAGTGACATCGTTTGGCTCCAATGTGCTCCTTGTCGGAGA 532
Query 648 TGCTACTCTCAATCCGACCCGATATTCGACCCGAGAAAATCCAAGACCTATGCCACAATC 707
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TGTTACTCTCAATCCGACCCGATATTCGACCCGAGAAAATCCAAGACCTATGCCACAATC 592
Query 708 CCCTGTTCTTCACCTCACTGCCGCCGATTAGACTCCGCCGGATGCAACACCCGTCGTAAG 767
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 593 CCCTGTTCTTCACCTCACTGCCGGCGATTAGACTCCGCCGGATGCAACACCCGTCGTAAA 652
Query 768 ACTTGTCTCTACCAAGTCTCTTACGGAGATGGTTCTTTCACCGTCGGCGATTTCTCCACC 827
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 653 ACTTGTCTCTACCAAGTCTCATACGGAGATGGTTCTTTCACCGTCGGTGATTTCTCCACC 712
Query 828 GAAACGCTAACTTTCCGGCGAAATCGCGTTAAAGGCGTTGCTCTCGGATGTGGCCACGAC 887
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 713 GAAACTCTAACTTTCCGACGAAATCGCGTTAAAGGCGTCGCTCTCGGATGTGGCCACGAC 772
Query 888 AACGAAGGTCTCTTCGTCGGAGCCGCCGGTTTATTAGGACTCGGTAAAGGTAAATTATCG 947
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 773 AACGAAGGTCTCTTCGTCGGAGCCGCCGGTTTATTAGGTCTCGGTAAAGGAAAATTATCA 832
Query 948 TTCCCCGGTCAAACCGGTCACCGGTTTAATCAGAAATTCTCTTACTGTTTAGTCGACAGA 1007
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 833 TTTCCCGGTCAAACCGGTCACCGGTTTAATCAGAAATTCTCGTACTGTTTAGTCGATAGA 892
Query 1008 TCCGCTTCTTCGAAACCTTCCTCGGTCGTCTTCGGAAACGCCGCCGTATCACGAATCGCG 1067
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 893 TCCGCTTCTTCGAAACCTTCCTCAGTCGTCTTCGGAAACGCCGCCGTGTCACGAATCGCG 952
Query 1068 AGATTCACGCCACTTTTGTCAAACCCAAAACTCGACACTTTCTACTACGTCGGGCTTCTG 1127
||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 953 AGATTCACGCCGCTTTTGTCAAACCCAAAGCTCGACACTTTCTACTACGTCGAGCTTCTC 1012
Query 1128 GGAATTAGCGTCGGAGGGACACGTGTCCCCGGCGTAACGGCTTCTCTTTTTAAACTTGAC 1187
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1013 GGAATTAGCGTCGGAGGGACACGTGTCCCCGGCGTGGCGGCTTCTCTTTTTAAACTCGAC 1072
Query 1188 CAGATCGGTAACGGTGGAGTTATTATCGATTCGGGTACGTCTGTGACCCGGTTGATCCGA 1247
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CAGATCGGTAACGGTGGGGTTATTATCGATTCGGGTACGTCTGTGACCCGGTTGATCCGA 1132
Query 1248 CCAGCTTATATTGCTATGAGAGACGCGTTCCGGGTCGGAGCTAAGACATTGAAAAGAGCT 1307
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1133 CCCGCTTATATTGCTATGAGAGACGCGTTCCGGGTCGGAGCTAAGACCTTGAAAAGAGCT 1192
Query 1308 CCGGATTTCTCACTCTTCGACACGTGTTTCGATCTCTCCAATATGAACGAGGTTAAAGTA 1367
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1193 CCGGATTTCTCACTCTTCGACACGTGTTTCGATCTCTCTAATATGAACGAGGTCAAAGTA 1252
Query 1368 CCGACGGTGGTTTTACATTTCCGTGGAGCTGACGTATCACTTCCGGCGACGAATTACCTG 1427
|| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1253 CCCACGGTGGTTTTACATTTCCGTGGAGCTGACGTGTCACTTCCGGCGACCAATTACCTG 1312
Query 1428 ATCCCTGTGGATACCAACGGCAAGTTCTGTTTTGCGTTTGCCGGTACGATGGGCGGACTA 1487
|| || || ||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1313 ATTCCGGTTGATACTAACGGTAAATTCTGTTTTGCGTTTGCCGGTACGATGGGCGGACTA 1372
Query 1488 TCCATAATTGGGAATATCCAGCAACAGGGTTTCCGGGTTGTATACGACTTAGCGAGTTCC 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 TCCATAATTGGGAATATCCAGCAACAGGGTTTCCGGGTTGTATACGACTTAGCGAGTTCC 1432
Query 1548 CGGGTCGGGTTTGCTCCAGGAGGATGCGCTTAATAATTAGATCTGACCGGAGCCGGTACG 1607
|||||||||||||||||||||||||||||||||| | || | ||||||| ||||||||
Sbjct 1433 CGGGTCGGGTTTGCTCCAGGAGGATGCGCTTAATTCT--GACCCGACCGGAACCGGTACG 1490
Query 1608 GATAATGTACTTTTGTTTTCTCAATTTAATGCTTA 1642
||||||||||||||| || | | ||||||||||||
Sbjct 1491 GATAATGTACTTTTGCTTACGCTATTTAATGCTTA 1525
Score = 185 bits (100), Expect = 8e-46
Identities = 119/127 (94%), Gaps = 5/127 (4%)
Strand=Plus/Plus
Query 1672 ACAAGTGAATCTTTAAGCGGTGGAGTTGAATACGTGTTGATAAAATCTTCACGTGTTGTC 1731
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1525 ACAAGTGAATCTTTAAGCGGTGGAGTTGATTACGTGTTGATAAAATCTTCACGTGTTGTC 1584
Query 1732 GGCTGTATTATTAGTATCGTCTTTAT-T-TT--ACATCTC-GGACCAAAGAGAGCGTGTA 1786
|||||||||||||||||||||||||| | || ||| || |||||||||||||||||||
Sbjct 1585 GGCTGTATTATTAGTATCGTCTTTATATATTTTACACCTTTGGACCAAAGAGAGCGTGTA 1644
Query 1787 TGATTTT 1793
|||||||
Sbjct 1645 TGATTTT 1651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68410080020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5